Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1256 ATGGATTTGATTGAAGGTGTGGGGGAGAGTTCGTCTCCTCCGCGGAGCTTCGGGTGCTTCGGTGTGTATGATGTGAGGAACGATGTGTATAATCGGTTGATGGAGAGTGGGAACGAGGAGGCAGTGAGTAATCCCGAGTTTCGCGAACAGTTGGATGCTCACTTCAATCGCTTGCCTCCTAGTTATGGACTAGATGTCAATATTGATAGAGTGGATGATGTTCTGTTACATCAAAAACTGCTTGCTTTGGCGAAGGAACCAGATAAACGACCTGTTTATCATGTTCGTTTCTTGGAGAATTTATCAACTAAAGTAGATGGTAATGATGATCAACAATCTATGAGTGTTCTTTCTACCGCAAGGCCATGTTGTAATGCAGATAATGAAGGAGTTGTGCCATCACATAACAGGAATGAGATTGATTTTGAACCTTGCTCTAAGCTTGAGGACCTAAATTTGGATGTTAAGAAGGATTCCACAGACATGGAGAGAAGATGTCTTATGGAGAATTCTTCTAGAAGACAGGAAACTTCAAATGTTCCAATTCATGAAGTAATATTTTCTACCATTGACAAGCCCAAGCTTCTTAGTCAGCTTTCTGCTTTGCTTTCCGACATAGGACTTAACATCCGTGAAGCGCATGTCTTCTCGACAATTGATGGCTACTCCTTGGATGTCTTTGTAGTGGATGGATGGCCTGTTGAGGATACAGATGGTTTGAGTGAAGCTATGGAAAAAGCAATTGCTAGAAGTGAGGGTTCGTGGTCTGGTTCTTCACATTCTCATTCAGCAGTGGAAAAAGCATTAGCAGCACAAGTCAAATCTGGAGATTGGGAAATAGATAGAAGATTATTGAAGATAGGAGAAAGAATTGCATCTGGATCTTGTGGAGATTTGTATCGTGGAGTTTATCTTGGTCAGGATGTTGCTGTTAAGATTCTTAGGTCTGAGCATTTGAATGAATCTCTGGAGGATGAATTTGAACAAGAAGTGGCAATTCTGAGGGAGGTTCAACATAGAAATGTTGTTCGATTTATTGGTGCCTGTACAAGGTCTCCACATTTGTGCATAGTAACTGAGTATATGCCTGGAGGAAGCCTGTATGATTATTTGCATAAGAATCACAATGTCTTGAAGCTCCCTCAATTGCTGAAGTTTGCAATTGATGTCTGTAAAGGAATGGGGTATTTGCATCAAAACAACATAATTCACAGGGATCTGAAGACAGCAAATTTGCTAATGGATACTCATAATGTTGTTAAGGTGGCAGATTTTGGTGTTGCTCGGTTCCAAAATCAAGAGGGAGTGATGACTGCAGAGACTGGAACTTACAGATGGATGGCACCTGAGGTTATAAATCACCTACCATATGATCAAAAGGCAGATGTATTCAGTTTTGCCATTGTACTGTGGGAGCTAACAACGGCTAAGATTCCATATGATAACATGACTCCATTACAAGCTGCCCTAGGAGTGAGACAGGGACTGCGACCAGATCTTCCTGAGAATACACATCCCAAACTGGTGGACATGATGCAGAGATGTTGGGAGGCAGTTCCTGGAAATCGGCCTTCCTTCTCTGAGATAACAGTTGAACTTGAAGAATTGCTACAAGAAGTTCAGGGAACTTCAAGAGCATCAAATGGCAACTGA 1653 41.86 MDLIEGVGESSSPPRSFGCFGVYDVRNDVYNRLMESGNEEAVSNPEFREQLDAHFNRLPPSYGLDVNIDRVDDVLLHQKLLALAKEPDKRPVYHVRFLENLSTKVDGNDDQQSMSVLSTARPCCNADNEGVVPSHNRNEIDFEPCSKLEDLNLDVKKDSTDMERRCLMENSSRRQETSNVPIHEVIFSTIDKPKLLSQLSALLSDIGLNIREAHVFSTIDGYSLDVFVVDGWPVEDTDGLSEAMEKAIARSEGSWSGSSHSHSAVEKALAAQVKSGDWEIDRRLLKIGERIASGSCGDLYRGVYLGQDVAVKILRSEHLNESLEDEFEQEVAILREVQHRNVVRFIGACTRSPHLCIVTEYMPGGSLYDYLHKNHNVLKLPQLLKFAIDVCKGMGYLHQNNIIHRDLKTANLLMDTHNVVKVADFGVARFQNQEGVMTAETGTYRWMAPEVINHLPYDQKADVFSFAIVLWELTTAKIPYDNMTPLQAALGVRQGLRPDLPENTHPKLVDMMQRCWEAVPGNRPSFSEITVELEELLQEVQGTSRASNGN* 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 14296311 14329573 - Vvi18g1256 Vvi18g1256 780959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1256 550 SUPERFAMILY Protein kinase-like (PK-like) 268 536 IPR011009 -
Vvi18g1256 550 SMART serkin_6 285 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1256 550 CDD STKc_MAP3K-like 291 533 - -
Vvi18g1256 550 Gene3D Phosphorylase Kinase; domain 1 273 362 - -
Vvi18g1256 550 SUPERFAMILY ACT-like 183 251 IPR045865 -
Vvi18g1256 550 Gene3D Transferase(Phosphotransferase) domain 1 363 549 - -
Vvi18g1256 550 Coils Coil 320 340 - -
Vvi18g1256 550 Pfam Protein tyrosine and serine/threonine kinase 285 532 IPR001245 GO:0004672|GO:0006468
Vvi18g1256 550 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 544 - -
Vvi18g1256 550 ProSiteProfiles Protein kinase domain profile. 285 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1256 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672|GO:0006468
Vvi18g1256 550 ProSiteProfiles ACT domain profile. 184 262 IPR002912 -
Vvi18g1256 550 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 10 544 - -
Vvi18g1256 550 PRINTS Tyrosine kinase catalytic domain signature 359 372 IPR001245 GO:0004672|GO:0006468
Vvi18g1256 550 PRINTS Tyrosine kinase catalytic domain signature 396 414 IPR001245 GO:0004672|GO:0006468
Vvi18g1256 550 PRINTS Tyrosine kinase catalytic domain signature 442 452 IPR001245 GO:0004672|GO:0006468
Vvi18g1256 550 PRINTS Tyrosine kinase catalytic domain signature 461 483 IPR001245 GO:0004672|GO:0006468
Vvi18g1256 550 PRINTS Tyrosine kinase catalytic domain signature 504 526 IPR001245 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76346 PF07714 PK_Tyr_Ser-Thr 1.70E-73 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1256 - - vvi:100246204 1083.17