Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1257 ATGCTATTGTTAAAAATTTTGAATTCTAGGATTTCATTTTGGACTACAAATCAAGCTAGAATTTTTATAGAATTAATTCTACGGGAACATTATATTGTGTATAACATCCTTCTCCATGGATATGTCTCTCTCAATGGAGAAGAAGAGCTCTATCATCCATTGCTGGTGGTGATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACTAAATTGTGGCAGAGTCATCAGTTTCGAGTAATTGGTACTCCCCAAAACATATATCGTGGTTCTTGTTATTTACGAGAAGGATCAACTCATAGAAGTATAAGTTGTTCAATGAAGTCTTATCGACTATCAGAGCTCTCTCAGGCTGAAGTCAACAGCCTCAAGGCTCGTCCTCGTATTGATTTCTCTTCCATTTTCAATGTGGTTCACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGATTATACTACACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGTTGCTGAACTTCCAGATCCAGAGCTTGATGCAGGTATAAAAGAAGCATTTGATGTGGCATATGATAACATTTTTGCATTTCATGCTGCTCAAAAGTCAGCTGAAAAAATTGTTGAGAACATGAAAGGTGTTAAATGCAAACGGGTTGCAAGGAGCATTGCTTCTGTTGGTCTTTATGTTCCAGGAGGAACTGCAGTGTTACCTTCAACAGCTCTGATGCTTTCAGTTCCTGCACAGATTGCTGGGTGTAAGACTGTTGTCCTTGCAACTCCCCCTAGTCAAGATGGCGGCATCTGCAAGGAGGTACTCTATTGTGCCAAGAAAGCTGGTGTGACTCATATCCTCAAAGCTGGAGGGGCACAGGCCATTGCTGCCATGGCATGGGGGACAACATCATGCCCTAAGGTGGAAAAGATTTTTGGCCCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTCCAAAATAGTGAAGCTATGGTTTCAATTGATATGCCTGCGGGTCCATCAGAAGTTCTAGTCATTGCCGACAAACATGCTAATCCTGTTCATATTGCTGCAGATTTGTTGTCCCAGGCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGCGTGGACCTAAGGGCTATTGAGGAGGAAATCAGCAAGCAGTGCCAAAGCCTTCCAAGAGGAGAGTTTGCTTCAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCAATATGGTTGAGGCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTGAAAGATGCTGAGAAGTGGGAGAATTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGGCAGTGGACACCGGAAAGTGTGGGGGATTATGCAAGTGGAACAAACCATGTCCTTCCAACATATGGCTATGCACGGATGTATGGCGGGTTGTCTCTCGACTCCTTCTTGAAGTATATGACAGTACAGTCTTTGACAGAGGAAGGCCTGAGGAAGCTTGGCCCATATGTGGAAGCCATGGCTGAAGTTGAAGGACTGGAAGCCCACAAGAGAGCTGTAACTCTAAGACTACAGGATATTGAAGCAAGGCAAGTGCCCAATATGAGATGA 1641 42.66 MLLLKILNSRISFWTTNQARIFIELILREHYIVYNILLHGYVSLNGEEELYHPLLVVMDIQLVSFNRSNFLTKLWQSHQFRVIGTPQNIYRGSCYLREGSTHRSISCSMKSYRLSELSQAEVNSLKARPRIDFSSIFNVVHPIVDDVRSRGDAAVKDYTTRFDKVELDRLIENVAELPDPELDAGIKEAFDVAYDNIFAFHAAQKSAEKIVENMKGVKCKRVARSIASVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGGICKEVLYCAKKAGVTHILKAGGAQAIAAMAWGTTSCPKVEKIFGPGNQYVTAAKMILQNSEAMVSIDMPAGPSEVLVIADKHANPVHIAADLLSQAEHGPDSQVVLVIAGDGVDLRAIEEEISKQCQSLPRGEFASKALSHSFTVFARNMVEAISFSNLYAPEHLIINVKDAEKWENFIENAGSVFLGQWTPESVGDYASGTNHVLPTYGYARMYGGLSLDSFLKYMTVQSLTEEGLRKLGPYVEAMAEVEGLEAHKRAVTLRLQDIEARQVPNMR* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 14365660 14379400 - Vvi18g1257 Vvi18g1257 780960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1257 546 PRINTS Histidinol dehydrogenase signature 140 164 IPR012131 GO:0016616|GO:0046872|GO:0051287
Vvi18g1257 546 PRINTS Histidinol dehydrogenase signature 239 265 IPR012131 GO:0016616|GO:0046872|GO:0051287
Vvi18g1257 546 PRINTS Histidinol dehydrogenase signature 274 300 IPR012131 GO:0016616|GO:0046872|GO:0051287
Vvi18g1257 546 PRINTS Histidinol dehydrogenase signature 304 329 IPR012131 GO:0016616|GO:0046872|GO:0051287
Vvi18g1257 546 PRINTS Histidinol dehydrogenase signature 336 357 IPR012131 GO:0016616|GO:0046872|GO:0051287
Vvi18g1257 546 PRINTS Histidinol dehydrogenase signature 358 377 IPR012131 GO:0016616|GO:0046872|GO:0051287
Vvi18g1257 546 PRINTS Histidinol dehydrogenase signature 427 452 IPR012131 GO:0016616|GO:0046872|GO:0051287
Vvi18g1257 546 PRINTS Histidinol dehydrogenase signature 468 486 IPR012131 GO:0016616|GO:0046872|GO:0051287
Vvi18g1257 546 PANTHER HISTIDINOL DEHYDROGENASE HDH 61 538 IPR012131 GO:0016616|GO:0046872|GO:0051287
Vvi18g1257 546 Gene3D Nitrogenase molybdenum iron protein domain 138 492 - -
Vvi18g1257 546 Coils Coil 520 540 - -
Vvi18g1257 546 Gene3D - 493 538 - -
Vvi18g1257 546 Pfam Histidinol dehydrogenase 128 534 IPR012131 GO:0016616|GO:0046872|GO:0051287
Vvi18g1257 546 ProSitePatterns Histidinol dehydrogenase signature. 336 368 IPR001692 GO:0016616
Vvi18g1257 546 Gene3D Nitrogenase molybdenum iron protein domain 340 458 - -
Vvi18g1257 546 SUPERFAMILY ALDH-like 134 534 IPR016161 GO:0016491
Vvi18g1257 546 CDD Histidinol_dh 136 526 IPR012131 GO:0016616|GO:0046872|GO:0051287
Vvi18g1257 546 TIGRFAM hisD: histidinol dehydrogenase 140 533 IPR012131 GO:0016616|GO:0046872|GO:0051287
Vvi18g1257 546 Hamap Histidinol dehydrogenase [hisD]. 115 535 IPR012131 GO:0016616|GO:0046872|GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1257 K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] - vvi:100253086 962.6
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004310 1 9 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 0 1 1 1 3 1 1 43