Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1259 ATGGGAAAATCTACATTATTAAAACTTCTTGCTTGGAGGAAGATTCCAGTACCTAAAAATATTGATGTACTATTGGTTGAGCAAGAGGTGATCGGTGATGATAAAACTGCCCTTCAGGCAGTTATTTCAGCGAACGAAGAGCTAGTCAGGCTCCGACAGGAAGATGAAAAGGATGATGCTCAGGCATCAAAGATTCTTGCTGGACTGGGTTTCACTAAGGAGATGCAGGGCCGTGTAACCCGATCATTTAGTGGTGGGTGGAGGATGAGAATTTCATTGGCTAGGGCACTCTTTGTGCAGCCAACTCTTTTATTGCTGGATGAACCTACCAACCATCTCGACCTTAGGGCTGTTCTCTGGTTAGAGGAGTACTTGTGCCGGTGGAAGAAAACTCTTGTTGTTGTCTCACATGATCGGGATTTTCTTAACACAGTTTGCAGTGAAATTATTCATCTCCATGACCAGAAACTTCACTTCTACCGTGGGAACTTTGATGATTTTGAAAGTGGGTATGAGCAGCGGAATCGGGCCCCAAAGAAGTGGAGAGATTACAGTGTGGAGTTCCACTTCCCTCAACCCACTGAGTTAACCCCACCACTCTTACAGCTTATTGAAGTCAGTTTCAGTTATCCGAACAGGGAGGATTTCAGGCTCTCTGAGGTCGATGTTGGTATTGACATGGGGACTCGTGTTGCCATTGTTGGACCCAATGGAGCTGGGAAATCTACATTACTTAATCTTCTTGCTGGTGATTTGGTTCCAACGGAGGGTGAAGTGCGAAGGAGTCAAAAACTGAGGATTGGGAGGTACTCACAGCACTTTGTGGACCTTCTGACAATGGATGAAACGCCGAAAGCACGGGTTGTCTTCACATCAATTTCCATGTCAAAACCACACATTTTGCTGTTGGATGAGCCCACAAATCATCTAGACATGCAGAGCATTGATGCATTGGCTGACGCACTAGATGAGTTCAGCGGTGGAGTGGTGCTTGTAAGTCATGATTCGCGGTTAATATCTCGTGTGTGTAACGATGAGGAGAAGAGTGAAATTTGGGTAGTAGAAAACGGAACCGTGAGTAGTTTCCCTGAATCATTTGAGGAGTACAAGGAAGAGCTACAGAGAGAGATCAAAGCCGAGAAAATAGGATTTGTTCTTCCACTATTTAGCAATTCTTCTATTATGTGGAATAATTATTTCCGGTATATTCTTCAACTTTAA 1221 44.14 MGKSTLLKLLAWRKIPVPKNIDVLLVEQEVIGDDKTALQAVISANEELVRLRQEDEKDDAQASKILAGLGFTKEMQGRVTRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDQKLHFYRGNFDDFESGYEQRNRAPKKWRDYSVEFHFPQPTELTPPLLQLIEVSFSYPNREDFRLSEVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFSGGVVLVSHDSRLISRVCNDEEKSEIWVVENGTVSSFPESFEEYKEELQREIKAEKIGFVLPLFSNSSIMWNNYFRYILQL* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 14382174 14384416 + Vvi18g1259 Vvi18g1259 780962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1259 406 CDD ABCF_EF-3 64 156 - -
Vvi18g1259 406 SMART AAA_5 227 358 IPR003593 -
Vvi18g1259 406 SMART AAA_5 1 163 IPR003593 -
Vvi18g1259 406 PANTHER BNAA06G39310D PROTEIN 285 380 - -
Vvi18g1259 406 Pfam ABC transporter 2 111 IPR003439 GO:0005524
Vvi18g1259 406 Gene3D - 1 184 IPR027417 -
Vvi18g1259 406 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 285 380 - -
Vvi18g1259 406 CDD ABCF_EF-3 201 358 - -
Vvi18g1259 406 Gene3D - 187 287 IPR027417 -
Vvi18g1259 406 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 201 381 IPR003439 GO:0005524
Vvi18g1259 406 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 54 - -
Vvi18g1259 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 360 IPR027417 -
Vvi18g1259 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 168 IPR027417 -
Vvi18g1259 406 Pfam ABC transporter 218 262 IPR003439 GO:0005524
Vvi18g1259 406 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 176 284 - -
Vvi18g1259 406 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 58 176 - -
Vvi18g1259 406 ProSitePatterns ABC transporters family signature. 83 97 IPR017871 GO:0005524
Vvi18g1259 406 Gene3D - 288 383 IPR027417 -
Vvi18g1259 406 PANTHER BNAA06G39310D PROTEIN 176 284 - -
Vvi18g1259 406 PANTHER BNAA06G39310D PROTEIN 58 176 - -
Vvi18g1259 406 PANTHER BNAA06G39310D PROTEIN 1 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1259 K06184 ABCF1; ATP-binding cassette, subfamily F, member 1 - ini:109150896 619.002
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1259 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002655 2 2 2 3 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 2 3 3 2 0 2 2 2 58