Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1266 ATGCAGGGCCCTTGCCGAGCTTTATTAGCTGATATGTCTGGGCATAACCACAAGAAAACAAGGACAGCAAACTCGTATTACTCGTTTTTCATGGCGGTCGGGAATGTCCTGGGTTATGCAGCTGGCTCTTATACTGACCTTTATAAGGTCTTCCCATTCACAAAGACAAAGGCTTGTGATGTGTACTGTGCGAACCTTAAAACTTGCTTCATTTTCGCTATTATTCTCCTCCTGGTCTTAACCACTGCAGCTATGACTTTAGTAAAAGAAAGGCCACTTGTTTTAACTCAACAATACAACGCAGACCAGGATGAAGAGGACGAAGAGGAGGTTTCAATGCCATTTTTCGGGCAGATCTTGTCTGCATTAGGGAACTTATCCCGGTCAATGTGGATGCTAATTGTTGTTACATCCTTGAACTGGCTTGCCTGGTTTGGTTTCCTATTGTTTGACACTGACTGGATGGGGAAAGAAGTCTACGGAGGGACGGTCAAAGGTAAAGAATCAAAGCTGTATGATAGGGGTGTACACGCAGGTTCGCTAGGGTTGATGCTGAACTCATTGGTGCTAGGGTTAATGTCATTGGCAATCGAGCCAGCAGCTCGTTTGATGGGTGGTGTGAAGCGGGTATGGGGTATTGGGAACTTCATACTAGCCATTTGCTTGGGACTTACAGTTGCGGTCACAAAGATGGCCCAATCTTCCAGACATGAAGCTGCTGCTGAAGGCAGAAGCTTGATGCCTCCAGCCAACGTTAAGATTTTTGCCTTGACGATCTTCGCCTTGTTGGGCATACCTCAAGCGATCACATACAGTATCCCCTTCGCCCTAGCATCCATATATTCCAATGCCTCTGGTGCTGGCCAAGGCCTTTCTCTAGGAGTTTTAAACATGGCAATAGTGCTACCACAGATACTGGTTTCTGCGGTCAGCGGACTGTTGGATGATTTATTTGGTGGTGGTAACTTACCAGTCTTTGTTGCGGGAGCCATCGCTGCTGCAGCAAGTGGGGTATTTGCACTCACCATTCTACCATCTCCACCGGCGCAACCTTCTAGGCTCTGA 1065 47.23 MQGPCRALLADMSGHNHKKTRTANSYYSFFMAVGNVLGYAAGSYTDLYKVFPFTKTKACDVYCANLKTCFIFAIILLLVLTTAAMTLVKERPLVLTQQYNADQDEEDEEEVSMPFFGQILSALGNLSRSMWMLIVVTSLNWLAWFGFLLFDTDWMGKEVYGGTVKGKESKLYDRGVHAGSLGLMLNSLVLGLMSLAIEPAARLMGGVKRVWGIGNFILAICLGLTVAVTKMAQSSRHEAAAEGRSLMPPANVKIFALTIFALLGIPQAITYSIPFALASIYSNASGAGQGLSLGVLNMAIVLPQILVSAVSGLLDDLFGGGNLPVFVAGAIAAAASGVFALTILPSPPAQPSRL* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 15866680 15868604 - Vvi18g1266 Vvi18g1266 780969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1266 354 PANTHER SUGAR TRANSPORTER 1 350 - -
Vvi18g1266 354 Gene3D MFS general substrate transporter like domains 1 344 IPR036259 -
Vvi18g1266 354 SUPERFAMILY MFS general substrate transporter 3 348 IPR036259 -
Vvi18g1266 354 PANTHER SUCROSE TRANSPORT PROTEIN SUC7-RELATED 1 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1266 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - vvi:100253081 642.884
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1266 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00815 Bda13g01439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi18g575 . 27 490 Sucrose Transporter Gene Family AT1G22710 52.3 5.5e-142 501.5
Vvi18g1266 . 1 348 Sucrose Transporter Gene Family AT1G22710 61.9 1.4e-121 433.7
Vvi18g575 . 26 490 Sucrose Transporter Gene Family AT2G14670 53.2 5.4e-139 491.5
Vvi18g1266 . 1 345 Sucrose Transporter Gene Family AT2G14670 60.5 1.8e-113 406.8
Vvi18g575 . 26 418 Sucrose Transporter Gene Family AT1G66570 51.5 4.3e-114 408.7
Vvi18g1266 . 1 275 Sucrose Transporter Gene Family AT1G66570 56.3 7.2e-85 311.6
Vvi1g880 . 84 536 Sucrose Transporter Gene Family AT2G02860 69.4 4.9e-182 634.4
Vvi18g575 . 26 490 Sucrose Transporter Gene Family AT5G06170 51.4 8.4e-132 467.6
Vvi18g1266 . 1 345 Sucrose Transporter Gene Family AT5G06170 56.8 3.8e-100 362.5
Vvi18g575 . 26 490 Sucrose Transporter Gene Family AT5G43610 52.3 4.3e-136 481.9
Vvi18g1266 . 1 345 Sucrose Transporter Gene Family AT5G43610 60.8 3.3e-112 402.5
Vvi18g575 . 20 496 Sucrose Transporter Gene Family AT1G09960 71.8 3.8e-204 708.0
Vvi18g575 . 26 501 Sucrose Transporter Gene Family AT1G71880 50.7 1.6e-133 473.4
Vvi18g1266 . 1 348 Sucrose Transporter Gene Family AT1G71880 60.0 1.7e-111 400.2
Vvi18g1266 . 1 348 Sucrose Transporter Gene Family AT1G71890 58.6 1.6e-109 393.7
Vvi18g575 . 26 501 Sucrose Transporter Gene Family AT1G71880 50.7 1.6e-133 473.4
Vvi18g1266 . 1 348 Sucrose Transporter Gene Family AT1G71880 60.0 1.7e-111 400.2
Vvi18g575 . 27 490 Sucrose Transporter Gene Family AT1G22710 52.3 5.5e-142 501.5
Vvi18g1266 . 1 348 Sucrose Transporter Gene Family AT1G22710 61.9 1.4e-121 433.7
Vvi1g880 . 84 536 Sucrose Transporter Gene Family AT2G02860 69.4 4.9e-182 634.4
Vvi18g575 . 20 496 Sucrose Transporter Gene Family AT1G09960 71.8 3.8e-204 708.0
Vvi18g1266 . 1 348 Sucrose Transporter Gene Family AT1G71890 58.6 1.6e-109 393.7
Vvi18g575 . 26 490 Sucrose Transporter Gene Family AT5G43610 52.3 4.3e-136 481.9
Vvi18g1266 . 1 345 Sucrose Transporter Gene Family AT5G43610 60.8 3.3e-112 402.5
Vvi18g575 . 26 418 Sucrose Transporter Gene Family AT1G66570 51.5 4.3e-114 408.7
Vvi18g1266 . 1 275 Sucrose Transporter Gene Family AT1G66570 56.3 7.2e-85 311.6
Vvi18g575 . 26 490 Sucrose Transporter Gene Family AT2G14670 53.2 5.4e-139 491.5
Vvi18g1266 . 1 345 Sucrose Transporter Gene Family AT2G14670 60.5 1.8e-113 406.8
Vvi18g575 . 26 490 Sucrose Transporter Gene Family AT5G06170 51.4 8.4e-132 467.6
Vvi18g1266 . 1 345 Sucrose Transporter Gene Family AT5G06170 56.8 3.8e-100 362.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60