Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1269 ATGTTTGCTGCCTGTACACTTTTTGAAAAAACTTGGATTGAAGTATGTAGATCATATGCTACAAATGTGGTTAAGCAGCTCAAGGAACAAGAAATGGTGATGCCTGGGCATTGGGAGGCCAACTTGCAGACAAAGCTAAATCGATACATACCCAATGTTGTAGTCTTCGGTGCTATGTGTATCAGTGCATTGACTATACTGGCTGATTTCATCAGTACAATTAGCTCGGGCATAGGAATTTTATGTGTCGTGACCATTATTTATCAATACTTTGAAACATTAAAGAAGGAGAGAGTTAGCAAGCTTGGCTTATTTAGTTGTAGAGTGTTCAGTCTTTTGTTTGATTCAAAGTTTCTACTTTGA 363 37.74 MFAACTLFEKTWIEVCRSYATNVVKQLKEQEMVMPGHWEANLQTKLNRYIPNVVVFGAMCISALTILADFISTISSGIGILCVVTIIYQYFETLKKERVSKLGLFSCRVFSLLFDSKFLL* 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 15898546 15905025 + Vvi18g1269 Vvi18g1269 780972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1269 120 PANTHER BNAANNG21420D PROTEIN 2 100 - -
Vvi18g1269 120 SUPERFAMILY Preprotein translocase SecY subunit 1 97 IPR023201 -
Vvi18g1269 120 Pfam SecY 3 90 IPR002208 GO:0015031|GO:0016020
Vvi18g1269 120 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 2 100 IPR002208 GO:0015031|GO:0016020
Vvi18g1269 120 Gene3D SecY subunit domain 1 106 IPR023201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1269 K10956 SEC61A; protein transport protein SEC61 subunit alpha - vvi:100855182 149.058
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1