Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g127 ATGATCGATCCCAGAAGTGGGTTCTGCAAATCGAACTCCATTTTTTACAGTAAACGTAGACCCCTTTCTCTGCCACAGAACGAATTTATAGACGTCGCCACCTTCATCTCTTCTCGCCCACACCAAGGAAAGACGGCGTTTATCGATGCCGCCACTGGCCGCCGCCTCACTTTCACCGATGTCTGGAGAGCTGTTGATTCGGTGTCGTCGTGTCTCTCCGAGTTGGGGATTCGGAAAGGTGACGTCATCCTATTGCTGACTCCCAACTCCATTTTCTTTCCGATTGTTTGTCTCTCGGTGTTGTCTCTCGGCGCCGTGGTCACCACGACGAACCCGCTCAACACGCCTCGCGAAATCGGCAAGCAGATTGTCGACTCCAAACCGGTTCTCGTTTTCACAACTCAGTCACTCGCGCCTAAACTCACTGGGTCGAATCTTCCCATTCCGAATGGGAAGCGAGTCGGGGAGCGAGTGAATCAGGAGGACGCGGCGACTCTGCTCTACTCGTCCGGCACGACCGGCGAGAGCAAGGGGGTGGTGTCGTCGCACAGAAACCTCATCGCCATGGTTCAGAGCATCGTGAGCATGAACAGCTTTGAAGATGAAGAGGAGAGCTTTGTCTGTTTCCTTCCCATGTTCCACATGTACGGTCTAGGGGCGTTCGCACTGGGGAGGCTGGCGCGCGGATCAACGGTTATCGTGCTTCCGAGATTCGAGATGAACGAGATGCTCACTACCATCTCCAAGTACCGAGCCACTTGCCTCCCACTCGTGCCGCCCATACTGGTGGCGCTTGTGAACGGCGCTGATCAGATAAAGGCCAAGTACGACTTGAGTTCGCTACAGTATATTATATGCGGTGGAGCCCCACTGAGTAAGGAGGTGATAGAGGAGTTCTTGGAAAAGTACCCAAACGTTAACATTCGTCAGGGATACGCACTGACGGAGTCGACCACAGTCGGAGCGTCGACACATACTCTGGAGGAGAGCCGGCGGCATGGAACAGCGGGTCTGCTGTCGCCGAGCATGGAGGCGAAGATCGTGGACCCGGAAAGTGGAAAGGCATTGTCGGTGAATCGGGCGGGAGAGCTTTGGCTGAGAGGTCCCACCATTATGAAAGGTTACTTCAGAAATCCAGAAGCCACTGCATCGGCTCTGGACTCAAACGCATGGTTAAGGACCGGAGACCTCTGCTACATTGACGATGATGGGTTCCTTTTCGTGGTTGATAGGTTGAAGGAGGTGATCAAATACAAAGGATATCAGGTTCCCCCATCTGAACTAGAGGCCTTGTTGTTGACTCACCCAGAGATAGTTGATGCCGCTGTTGTACCATTCCCGGATAAGGAGGTTGGACAGTATCCAATGGCATACATTCATAGGAAAGCTGGAAGCTGCTTGTCCGAGGATGCTGTCATGGACTTCATATCTAAACAGGTGGCTCCATATAAGAGAATTCGGAGAGTTGCATTTGTAGCTTCCATTCCCAAGACTCCATCTGGCAAGATCCTTAGGAAGGATCTCATTCAACTTGCAACCTCCAAACTTTGA 1551 52.48 MIDPRSGFCKSNSIFYSKRRPLSLPQNEFIDVATFISSRPHQGKTAFIDAATGRRLTFTDVWRAVDSVSSCLSELGIRKGDVILLLTPNSIFFPIVCLSVLSLGAVVTTTNPLNTPREIGKQIVDSKPVLVFTTQSLAPKLTGSNLPIPNGKRVGERVNQEDAATLLYSSGTTGESKGVVSSHRNLIAMVQSIVSMNSFEDEEESFVCFLPMFHMYGLGAFALGRLARGSTVIVLPRFEMNEMLTTISKYRATCLPLVPPILVALVNGADQIKAKYDLSSLQYIICGGAPLSKEVIEEFLEKYPNVNIRQGYALTESTTVGASTHTLEESRRHGTAGLLSPSMEAKIVDPESGKALSVNRAGELWLRGPTIMKGYFRNPEATASALDSNAWLRTGDLCYIDDDGFLFVVDRLKEVIKYKGYQVPPSELEALLLTHPEIVDAAVVPFPDKEVGQYPMAYIHRKAGSCLSEDAVMDFISKQVAPYKRIRRVAFVASIPKTPSGKILRKDLIQLATSKL* 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1249391 1252271 + Vvi18g127 Vvi18g127 779830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g127 516 CDD 4CL 24 508 - -
Vvi18g127 516 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 150 515 - -
Vvi18g127 516 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 141 - -
Vvi18g127 516 Pfam AMP-binding enzyme 40 418 IPR000873 -
Vvi18g127 516 ProSitePatterns Putative AMP-binding domain signature. 166 177 IPR020845 -
Vvi18g127 516 SUPERFAMILY Acetyl-CoA synthetase-like 40 514 - -
Vvi18g127 516 Gene3D - 414 515 IPR045851 -
Vvi18g127 516 Gene3D - 12 413 IPR042099 -
Vvi18g127 516 Pfam AMP-binding enzyme C-terminal domain 427 502 IPR025110 -
Vvi18g127 516 PANTHER BNAA06G14440D PROTEIN 150 515 - -
Vvi18g127 516 PANTHER BNAA06G14440D PROTEIN 5 141 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g127 K10526 - vvi:100265969 993.03