Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g1273 | ATGGCCGCTGAATCCGCCGGAAAATCTATTGCTGTCTCTTCTTCGCGCAAGCCCTTCGACTTCTCCCCCGACTCTCCTCCGAGACTCTCCCTCACGCCTGATCAGTTCAAGCACTGCTCCGAAGCTCTCAGATTCTTCAAGGATAAGCTCCAGATGCCGGAGAAGATCCGCCAGGAGTTCGCTTTCTTGCAGGCCAATAGGATGAGACCATCTGAAATGATGAGAAGCTGCACTGTGGCTCTTGACAGTGTCAATTTGAGCAAAAATCGCTACACAGATGTCCTACCATTTGACAAAACCAGGGTTGTTCTCAACTCATGTAAGGATTACAGACCATCAGCTAGGGGCTATATCAATGCAAGCTTCATTGAGACTTCATCCACCGAAAGCATTTCTCGGTTTATAGCTACACAAGGTCCACTGCCACACACCTATGAGGACTTCTGGGAGATGGTAATCCAGTATCATTGTCCTGTTATTGTGATGCTTACTCGGTTGGTTGACAATTACAAGACGGTGAAATGTGGAGATTATTTTCAGGCAGAGGATGGTCCTAGAGAATTTGGTAATATATTTATCGTTACTAAGTGGATTAAAACTACCGAGACCTCGTTGGTGTTGCGTCATTTGGAGGTGAACTACAAAGAGTCAGAAGAGCCATCCTTGTCTGTTTTGCATATTCAATATCCTGAATGGCCTGATCATGGAGTTCCCAGAGACACATGTGCTGTTCGTGAAATGTTGAAAAGAATGTGTCATGTACTACCCAGTCTAGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGGAGAACAGGAACTTACTGCACAATTCACAACACAATTCAAAGGATCCTTATTGGAGATATGTCTGCCTTAGATCTTGTTAATACCATAACCACTTTTAGGTCTCAGCGAATTGGAATGGTTCAAACAATGGAGCAATTCCTTTTCTGCTACAATGCCATTGTGGATGAACTTGAAGACCTCATCTCAGGCAATGAAACAAACTCAAAATGCAGATGCTGA | 1029 | 44.61 | MAAESAGKSIAVSSSRKPFDFSPDSPPRLSLTPDQFKHCSEALRFFKDKLQMPEKIRQEFAFLQANRMRPSEMMRSCTVALDSVNLSKNRYTDVLPFDKTRVVLNSCKDYRPSARGYINASFIETSSTESISRFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKTVKCGDYFQAEDGPREFGNIFIVTKWIKTTETSLVLRHLEVNYKESEEPSLSVLHIQYPEWPDHGVPRDTCAVREMLKRMCHVLPSLGPIVVHCSAGIGRTGTYCTIHNTIQRILIGDMSALDLVNTITTFRSQRIGMVQTMEQFLFCYNAIVDELEDLISGNETNSKCRC* | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 16025494 | 16053846 | - | Vvi18g1273 | Vvi18g1273 | 780976 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g1273 | 342 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 263 | 273 | IPR016130 | GO:0016311|GO:0016791 | |
Vvi18g1273 | 342 | Gene3D | Protein tyrosine phosphatase superfamily | 32 | 336 | IPR029021 | - | |
Vvi18g1273 | 342 | ProSiteProfiles | PTP type protein phosphatase domain profile. | 56 | 326 | IPR000242 | GO:0004725|GO:0006470 | |
Vvi18g1273 | 342 | SMART | ptp_7 | 223 | 325 | IPR003595 | - | |
Vvi18g1273 | 342 | Pfam | Protein-tyrosine phosphatase | 85 | 324 | IPR000242 | GO:0004725|GO:0006470 | |
Vvi18g1273 | 342 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 245 | 317 | IPR000387 | GO:0016311|GO:0016791 | |
Vvi18g1273 | 342 | SMART | PTPc_3 | 55 | 328 | IPR000242 | GO:0004725|GO:0006470 | |
Vvi18g1273 | 342 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 40 | 327 | IPR029021 | - | |
Vvi18g1273 | 342 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Vvi18g1273 | 342 | PANTHER | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE | 9 | 335 | - | - | |
Vvi18g1273 | 342 | CDD | PTPc_plant_PTP1 | 117 | 321 | - | - | |
Vvi18g1273 | 342 | PRINTS | Protein tyrosine phosphatase signature | 116 | 123 | IPR000242 | GO:0004725|GO:0006470 | |
Vvi18g1273 | 342 | PRINTS | Protein tyrosine phosphatase signature | 134 | 154 | IPR000242 | GO:0004725|GO:0006470 | |
Vvi18g1273 | 342 | PRINTS | Protein tyrosine phosphatase signature | 222 | 239 | IPR000242 | GO:0004725|GO:0006470 | |
Vvi18g1273 | 342 | PRINTS | Protein tyrosine phosphatase signature | 260 | 278 | IPR000242 | GO:0004725|GO:0006470 | |
Vvi18g1273 | 342 | PRINTS | Protein tyrosine phosphatase signature | 293 | 308 | IPR000242 | GO:0004725|GO:0006470 | |
Vvi18g1273 | 342 | PRINTS | Protein tyrosine phosphatase signature | 309 | 319 | IPR000242 | GO:0004725|GO:0006470 | |
Vvi18g1273 | 342 | PANTHER | PROTEIN-TYROSINE-PHOSPHATASE PTP1 | 9 | 335 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g1273 | - | - | vri:117906467 | 682.945 |