Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1273 ATGGCCGCTGAATCCGCCGGAAAATCTATTGCTGTCTCTTCTTCGCGCAAGCCCTTCGACTTCTCCCCCGACTCTCCTCCGAGACTCTCCCTCACGCCTGATCAGTTCAAGCACTGCTCCGAAGCTCTCAGATTCTTCAAGGATAAGCTCCAGATGCCGGAGAAGATCCGCCAGGAGTTCGCTTTCTTGCAGGCCAATAGGATGAGACCATCTGAAATGATGAGAAGCTGCACTGTGGCTCTTGACAGTGTCAATTTGAGCAAAAATCGCTACACAGATGTCCTACCATTTGACAAAACCAGGGTTGTTCTCAACTCATGTAAGGATTACAGACCATCAGCTAGGGGCTATATCAATGCAAGCTTCATTGAGACTTCATCCACCGAAAGCATTTCTCGGTTTATAGCTACACAAGGTCCACTGCCACACACCTATGAGGACTTCTGGGAGATGGTAATCCAGTATCATTGTCCTGTTATTGTGATGCTTACTCGGTTGGTTGACAATTACAAGACGGTGAAATGTGGAGATTATTTTCAGGCAGAGGATGGTCCTAGAGAATTTGGTAATATATTTATCGTTACTAAGTGGATTAAAACTACCGAGACCTCGTTGGTGTTGCGTCATTTGGAGGTGAACTACAAAGAGTCAGAAGAGCCATCCTTGTCTGTTTTGCATATTCAATATCCTGAATGGCCTGATCATGGAGTTCCCAGAGACACATGTGCTGTTCGTGAAATGTTGAAAAGAATGTGTCATGTACTACCCAGTCTAGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGGAGAACAGGAACTTACTGCACAATTCACAACACAATTCAAAGGATCCTTATTGGAGATATGTCTGCCTTAGATCTTGTTAATACCATAACCACTTTTAGGTCTCAGCGAATTGGAATGGTTCAAACAATGGAGCAATTCCTTTTCTGCTACAATGCCATTGTGGATGAACTTGAAGACCTCATCTCAGGCAATGAAACAAACTCAAAATGCAGATGCTGA 1029 44.61 MAAESAGKSIAVSSSRKPFDFSPDSPPRLSLTPDQFKHCSEALRFFKDKLQMPEKIRQEFAFLQANRMRPSEMMRSCTVALDSVNLSKNRYTDVLPFDKTRVVLNSCKDYRPSARGYINASFIETSSTESISRFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKTVKCGDYFQAEDGPREFGNIFIVTKWIKTTETSLVLRHLEVNYKESEEPSLSVLHIQYPEWPDHGVPRDTCAVREMLKRMCHVLPSLGPIVVHCSAGIGRTGTYCTIHNTIQRILIGDMSALDLVNTITTFRSQRIGMVQTMEQFLFCYNAIVDELEDLISGNETNSKCRC* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 16025494 16053846 - Vvi18g1273 Vvi18g1273 780976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1273 342 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Vvi18g1273 342 Gene3D Protein tyrosine phosphatase superfamily 32 336 IPR029021 -
Vvi18g1273 342 ProSiteProfiles PTP type protein phosphatase domain profile. 56 326 IPR000242 GO:0004725|GO:0006470
Vvi18g1273 342 SMART ptp_7 223 325 IPR003595 -
Vvi18g1273 342 Pfam Protein-tyrosine phosphatase 85 324 IPR000242 GO:0004725|GO:0006470
Vvi18g1273 342 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 245 317 IPR000387 GO:0016311|GO:0016791
Vvi18g1273 342 SMART PTPc_3 55 328 IPR000242 GO:0004725|GO:0006470
Vvi18g1273 342 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 40 327 IPR029021 -
Vvi18g1273 342 MobiDBLite consensus disorder prediction 1 30 - -
Vvi18g1273 342 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 9 335 - -
Vvi18g1273 342 CDD PTPc_plant_PTP1 117 321 - -
Vvi18g1273 342 PRINTS Protein tyrosine phosphatase signature 116 123 IPR000242 GO:0004725|GO:0006470
Vvi18g1273 342 PRINTS Protein tyrosine phosphatase signature 134 154 IPR000242 GO:0004725|GO:0006470
Vvi18g1273 342 PRINTS Protein tyrosine phosphatase signature 222 239 IPR000242 GO:0004725|GO:0006470
Vvi18g1273 342 PRINTS Protein tyrosine phosphatase signature 260 278 IPR000242 GO:0004725|GO:0006470
Vvi18g1273 342 PRINTS Protein tyrosine phosphatase signature 293 308 IPR000242 GO:0004725|GO:0006470
Vvi18g1273 342 PRINTS Protein tyrosine phosphatase signature 309 319 IPR000242 GO:0004725|GO:0006470
Vvi18g1273 342 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 9 335 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1273 - - vri:117906467 682.945