Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1277 ATGCCTCAAAGATTGCCTTTTCAGGGAAGAAGAAGTCTTCGAAGAAGAAGAATAATAATTGTTGGAACAGTTGATAATGAAGAGCTAGGTGAAGGGTCGTCTTCTCTGAAACCTACTACTCCACAAGAGGAGAAAGTTCAGGTTCAGCCCGAACCAGTCCAAGCAGCAGATGCTACAGTTGAAAAAGAAGGTGAAGAAGAAGGTGTTGAAACAAAGAGTAAAGTTCCGGACAAGAAATTACCAAAACATGTAAGGGAGATGCAAGAGGCACTTGCTAGGCGCAAAGAAGCAGAAGAGAGGAAGAAAAGAGAAGAGGAGGAGAGACTAAGGAAGGAAGAAGAAGAACGGCGACGACAAGAAGAACTTGAGAGGTTGGCTGAGGAGGCCAAGCGCAGGAAAAAGGAAAGGGAAAAGGAAAAGCTTTTGAAGAAGAAACAGGAAGGTAAATTGTTGACAGGAAAGCAGAAAGAAGAAGCCCGTAGGAGGGAGGCAATGAGGAACCAAATACTGGCCAATGCAGGAGGTTTGCCCATCTCTACTGGTGATGCACCAACAAAACGGCCCAAGTATCAGACGAAGAAGGTGAAGTCACATCCCTCTCAAGCAAATGGTGCTGCCCCTTCTAAGCCAGATGAAAACACCGAAGCAAAGGAAAGCCTGCCAGAAACTGTGTCTGAGAAATTGGAAATCACTAATGCAACTGAAGAGAATGGGGTTGAAGAAGAAGAAGATGATGAAGAATGGGATGCAAAGAGCTGGGATGATGCAGTAACCTCCATTATTGAAAACCTTCGTTCTCCAATTTGCTGCATCATGGGTCATGTCCCTGGTCTATTGGTTATTGATACCCCTGGGCATGAATCCTTCACTAATTTGCGGTCCCGGGGTTCAGGCTTATGTGACATTGCGATTTTGGTGGTGGATATTATGCATGGATTAGAACCGCAAACAATAGAATCTCTCAATCTTTTAAAAATGAGGAATACAGAATTCATTGTTGCCTTGAATAAGGTGGACAGATTATATGGGTGGAAAGTTTGCCGCAATTCTCCAATTCAGAAGGCAATGAAGCAACAGTCTAAGGATGTACAAAATGAGTTCAATATGCGGCTCACTCAGATCATCACACAGTTCAAGGAACAAGGATTAAATACTGAGTTGTACTATAAGAACAAAGAAATGGGGGAAACTTTCAGTATTGTACCTACTAGTGCAATCAGTGGTGAAGGCATCCCAGACCTATTGCTATTATTGGTTCATTGGACTCAGAAAACAATGGTTGAGAAACTCACATACAGCAGTGAAGTGCAGTGTACGGTGTTGGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGGGCCCTATTGTTGCCACAATTCGAGCTTTATTGACACCACATCCAATGAAGGAACTTCGTGTCAAGGGAACTTATTTGCATCATAAGCAAATCAAGGCTGCACAAGGTATCAAGATCACCGCACAGGGCCTTGAGCATGCCATTGCGGGAACTGGTCTATATGTGGTAGGGCCTGATGATGATTTGGAAGATATCAAGGAAGCAGCCATGGAAGATATGAAGTCAGTCTTGAGTAGGATTGACAAGAGTGGTGAAGGAGTTTATGTTCAAGCATCTACTCTTGGGTCCTTGGAAGCATTGCTGGAGTTCTTAAAGAGTCCAGCAGTGAGTATTCCTGTTAGTGGTATAGGCATTGGCCCTGTACATAAAAAGGATGTCATGAAGGCTAGTGTCATGCTTGAGAAGAAGAAGGAATATGCTACTATCTTGGCATTTGATGTCAAAGTGACCCCTGAGGCTCGAGAACTTGCAGATGATATGGGTGTGAAGATATTTATTGCTGATATAATTTATCACTTGTTTGATCAGTTTAAGGCCTATATCGATAATCTCAAAGAGGAAAAGAAGAGGGAAGCTGCTGATGAAGCAGTCTTTCCATGTGTTCTTAAAATTATGCCCAACTGTATTTTCAACAAGAAGGATCCAATTGTTTTGGGAGTCGATGTTCTTGAAGGGATTGCAAAGGTTGGGACTCCAATTTGTATTCCTCAAAGGGATTTTATTGATATTGGCCGGATTGCATCCATTGAGAATAACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAGATAACCAGCACCAATCCTGAGGAGCAGCAAAAGATGTTTGGAAGGCATTTTGAGATGGAGGATGAACTTGTCAGCCATATCAGCAGAAAGTCAATTGATACACTTAAAGCTAATTACCGAGATGATCTGTCTCTTGATGAGTGGAAGTTGGTTGTGAAACTGAAAACCCTCTTCAAGATACAATGA 2412 42.95 MPQRLPFQGRRSLRRRRIIIVGTVDNEELGEGSSSLKPTTPQEEKVQVQPEPVQAADATVEKEGEEEGVETKSKVPDKKLPKHVREMQEALARRKEAEERKKREEEERLRKEEEERRRQEELERLAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEARRREAMRNQILANAGGLPISTGDAPTKRPKYQTKKVKSHPSQANGAAPSKPDENTEAKESLPETVSEKLEITNATEENGVEEEEDDEEWDAKSWDDAVTSIIENLRSPICCIMGHVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKVCRNSPIQKAMKQQSKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVHWTQKTMVEKLTYSSEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVATIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDIKEAAMEDMKSVLSRIDKSGEGVYVQASTLGSLEALLEFLKSPAVSIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADDMGVKIFIADIIYHLFDQFKAYIDNLKEEKKREAADEAVFPCVLKIMPNCIFNKKDPIVLGVDVLEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDIAKKGQRVAIKITSTNPEEQQKMFGRHFEMEDELVSHISRKSIDTLKANYRDDLSLDEWKLVVKLKTLFKIQ* 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 16149268 16162689 + Vvi18g1277 Vvi18g1277 780980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1277 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 502 IPR027417 -
Vvi18g1277 803 MobiDBLite consensus disorder prediction 235 250 - -
Vvi18g1277 803 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 274 803 IPR015760 -
Vvi18g1277 803 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 55 259 IPR015760 -
Vvi18g1277 803 CDD aeIF5B_II 435 545 - -
Vvi18g1277 803 MobiDBLite consensus disorder prediction 23 250 - -
Vvi18g1277 803 Pfam Elongation factor Tu GTP binding domain 277 422 IPR000795 GO:0003924|GO:0005525
Vvi18g1277 803 PANTHER PHOTOSYSTEM II PROTEIN D1 55 259 - -
Vvi18g1277 803 PANTHER PHOTOSYSTEM II PROTEIN D1 274 803 - -
Vvi18g1277 803 Coils Coil 80 147 - -
Vvi18g1277 803 MobiDBLite consensus disorder prediction 28 47 - -
Vvi18g1277 803 Gene3D - 553 659 IPR036925 -
Vvi18g1277 803 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 536 665 IPR036925 -
Vvi18g1277 803 Pfam Translation-initiation factor 2 540 652 IPR023115 -
Vvi18g1277 803 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 276 427 IPR000795 GO:0003924|GO:0005525
Vvi18g1277 803 CDD IF2_aeIF5B_IV 674 769 - -
Vvi18g1277 803 MobiDBLite consensus disorder prediction 58 165 - -
Vvi18g1277 803 CDD IF2_eIF5B 267 424 - -
Vvi18g1277 803 Pfam Elongation factor Tu domain 2 450 525 IPR004161 GO:0005525
Vvi18g1277 803 Gene3D Translation factors 666 803 - -
Vvi18g1277 803 Gene3D Translation factors 434 552 - -
Vvi18g1277 803 SUPERFAMILY Translation proteins 670 802 IPR009000 -
Vvi18g1277 803 Gene3D - 222 433 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1277 K03243 - vvi:100242745 1043.11