Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g1277 | ATGCCTCAAAGATTGCCTTTTCAGGGAAGAAGAAGTCTTCGAAGAAGAAGAATAATAATTGTTGGAACAGTTGATAATGAAGAGCTAGGTGAAGGGTCGTCTTCTCTGAAACCTACTACTCCACAAGAGGAGAAAGTTCAGGTTCAGCCCGAACCAGTCCAAGCAGCAGATGCTACAGTTGAAAAAGAAGGTGAAGAAGAAGGTGTTGAAACAAAGAGTAAAGTTCCGGACAAGAAATTACCAAAACATGTAAGGGAGATGCAAGAGGCACTTGCTAGGCGCAAAGAAGCAGAAGAGAGGAAGAAAAGAGAAGAGGAGGAGAGACTAAGGAAGGAAGAAGAAGAACGGCGACGACAAGAAGAACTTGAGAGGTTGGCTGAGGAGGCCAAGCGCAGGAAAAAGGAAAGGGAAAAGGAAAAGCTTTTGAAGAAGAAACAGGAAGGTAAATTGTTGACAGGAAAGCAGAAAGAAGAAGCCCGTAGGAGGGAGGCAATGAGGAACCAAATACTGGCCAATGCAGGAGGTTTGCCCATCTCTACTGGTGATGCACCAACAAAACGGCCCAAGTATCAGACGAAGAAGGTGAAGTCACATCCCTCTCAAGCAAATGGTGCTGCCCCTTCTAAGCCAGATGAAAACACCGAAGCAAAGGAAAGCCTGCCAGAAACTGTGTCTGAGAAATTGGAAATCACTAATGCAACTGAAGAGAATGGGGTTGAAGAAGAAGAAGATGATGAAGAATGGGATGCAAAGAGCTGGGATGATGCAGTAACCTCCATTATTGAAAACCTTCGTTCTCCAATTTGCTGCATCATGGGTCATGTCCCTGGTCTATTGGTTATTGATACCCCTGGGCATGAATCCTTCACTAATTTGCGGTCCCGGGGTTCAGGCTTATGTGACATTGCGATTTTGGTGGTGGATATTATGCATGGATTAGAACCGCAAACAATAGAATCTCTCAATCTTTTAAAAATGAGGAATACAGAATTCATTGTTGCCTTGAATAAGGTGGACAGATTATATGGGTGGAAAGTTTGCCGCAATTCTCCAATTCAGAAGGCAATGAAGCAACAGTCTAAGGATGTACAAAATGAGTTCAATATGCGGCTCACTCAGATCATCACACAGTTCAAGGAACAAGGATTAAATACTGAGTTGTACTATAAGAACAAAGAAATGGGGGAAACTTTCAGTATTGTACCTACTAGTGCAATCAGTGGTGAAGGCATCCCAGACCTATTGCTATTATTGGTTCATTGGACTCAGAAAACAATGGTTGAGAAACTCACATACAGCAGTGAAGTGCAGTGTACGGTGTTGGAGGTCAAGGTTGTCGAGGGCCATGGGACAACCATTGATGTTGTGTTGGTTAATGGTGTGCTTCATGAAGGGGATCAGATAGTTGTTTGTGGCATGCAGGGCCCTATTGTTGCCACAATTCGAGCTTTATTGACACCACATCCAATGAAGGAACTTCGTGTCAAGGGAACTTATTTGCATCATAAGCAAATCAAGGCTGCACAAGGTATCAAGATCACCGCACAGGGCCTTGAGCATGCCATTGCGGGAACTGGTCTATATGTGGTAGGGCCTGATGATGATTTGGAAGATATCAAGGAAGCAGCCATGGAAGATATGAAGTCAGTCTTGAGTAGGATTGACAAGAGTGGTGAAGGAGTTTATGTTCAAGCATCTACTCTTGGGTCCTTGGAAGCATTGCTGGAGTTCTTAAAGAGTCCAGCAGTGAGTATTCCTGTTAGTGGTATAGGCATTGGCCCTGTACATAAAAAGGATGTCATGAAGGCTAGTGTCATGCTTGAGAAGAAGAAGGAATATGCTACTATCTTGGCATTTGATGTCAAAGTGACCCCTGAGGCTCGAGAACTTGCAGATGATATGGGTGTGAAGATATTTATTGCTGATATAATTTATCACTTGTTTGATCAGTTTAAGGCCTATATCGATAATCTCAAAGAGGAAAAGAAGAGGGAAGCTGCTGATGAAGCAGTCTTTCCATGTGTTCTTAAAATTATGCCCAACTGTATTTTCAACAAGAAGGATCCAATTGTTTTGGGAGTCGATGTTCTTGAAGGGATTGCAAAGGTTGGGACTCCAATTTGTATTCCTCAAAGGGATTTTATTGATATTGGCCGGATTGCATCCATTGAGAATAACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAGATAACCAGCACCAATCCTGAGGAGCAGCAAAAGATGTTTGGAAGGCATTTTGAGATGGAGGATGAACTTGTCAGCCATATCAGCAGAAAGTCAATTGATACACTTAAAGCTAATTACCGAGATGATCTGTCTCTTGATGAGTGGAAGTTGGTTGTGAAACTGAAAACCCTCTTCAAGATACAATGA | 2412 | 42.95 | MPQRLPFQGRRSLRRRRIIIVGTVDNEELGEGSSSLKPTTPQEEKVQVQPEPVQAADATVEKEGEEEGVETKSKVPDKKLPKHVREMQEALARRKEAEERKKREEEERLRKEEEERRRQEELERLAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEARRREAMRNQILANAGGLPISTGDAPTKRPKYQTKKVKSHPSQANGAAPSKPDENTEAKESLPETVSEKLEITNATEENGVEEEEDDEEWDAKSWDDAVTSIIENLRSPICCIMGHVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKVCRNSPIQKAMKQQSKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVHWTQKTMVEKLTYSSEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVATIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDIKEAAMEDMKSVLSRIDKSGEGVYVQASTLGSLEALLEFLKSPAVSIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADDMGVKIFIADIIYHLFDQFKAYIDNLKEEKKREAADEAVFPCVLKIMPNCIFNKKDPIVLGVDVLEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDIAKKGQRVAIKITSTNPEEQQKMFGRHFEMEDELVSHISRKSIDTLKANYRDDLSLDEWKLVVKLKTLFKIQ* | 804 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 16149268 | 16162689 | + | Vvi18g1277 | Vvi18g1277 | 780980 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g1277 | 803 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 272 | 502 | IPR027417 | - | |
Vvi18g1277 | 803 | MobiDBLite | consensus disorder prediction | 235 | 250 | - | - | |
Vvi18g1277 | 803 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 274 | 803 | IPR015760 | - | |
Vvi18g1277 | 803 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 55 | 259 | IPR015760 | - | |
Vvi18g1277 | 803 | CDD | aeIF5B_II | 435 | 545 | - | - | |
Vvi18g1277 | 803 | MobiDBLite | consensus disorder prediction | 23 | 250 | - | - | |
Vvi18g1277 | 803 | Pfam | Elongation factor Tu GTP binding domain | 277 | 422 | IPR000795 | GO:0003924|GO:0005525 | |
Vvi18g1277 | 803 | PANTHER | PHOTOSYSTEM II PROTEIN D1 | 55 | 259 | - | - | |
Vvi18g1277 | 803 | PANTHER | PHOTOSYSTEM II PROTEIN D1 | 274 | 803 | - | - | |
Vvi18g1277 | 803 | Coils | Coil | 80 | 147 | - | - | |
Vvi18g1277 | 803 | MobiDBLite | consensus disorder prediction | 28 | 47 | - | - | |
Vvi18g1277 | 803 | Gene3D | - | 553 | 659 | IPR036925 | - | |
Vvi18g1277 | 803 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 536 | 665 | IPR036925 | - | |
Vvi18g1277 | 803 | Pfam | Translation-initiation factor 2 | 540 | 652 | IPR023115 | - | |
Vvi18g1277 | 803 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 276 | 427 | IPR000795 | GO:0003924|GO:0005525 | |
Vvi18g1277 | 803 | CDD | IF2_aeIF5B_IV | 674 | 769 | - | - | |
Vvi18g1277 | 803 | MobiDBLite | consensus disorder prediction | 58 | 165 | - | - | |
Vvi18g1277 | 803 | CDD | IF2_eIF5B | 267 | 424 | - | - | |
Vvi18g1277 | 803 | Pfam | Elongation factor Tu domain 2 | 450 | 525 | IPR004161 | GO:0005525 | |
Vvi18g1277 | 803 | Gene3D | Translation factors | 666 | 803 | - | - | |
Vvi18g1277 | 803 | Gene3D | Translation factors | 434 | 552 | - | - | |
Vvi18g1277 | 803 | SUPERFAMILY | Translation proteins | 670 | 802 | IPR009000 | - | |
Vvi18g1277 | 803 | Gene3D | - | 222 | 433 | IPR027417 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g1277 | K03243 | - | vvi:100242745 | 1043.11 |