Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1278 ATGTTAGAAACTGGAAGCTGCGAATCCTTAGTTGTCGGGGACGATGTGGAGCAACAAGCCAGCCAGCTTGAGAATGAAGCCAAGGAATTCGACTACTCAAAACGCTCGCAATGGTTAAGGGCCGCCGTCCTAGGAGCCAATGATGGGCTGGTCTCCACCGCGTCGTTAATGATGGGGGTCGGAGCCGTGAAGCAAGACATCAAGGCCATGATACTAACCGGGTTCGCTGGCTTGGTGGCCGGGGCTTGCAGCATGGCCATAGGAGAGTTTGTATCGGTGTACTCACAGTTGGACATAGAAGTGGCCCAACGGAAGAGAGATAAGAGGAGGGGTGAGAAGGAGAACCTCCCCAACCCAGTACAAGCTGCAGCAGCATCTGCCCTAGCATTTGCAGTGGGAGCCATGGTGCCATTGCTAGCTGCATCATTTATAAGGGAGTATAAGGTAAGGCTAGGAGCGGTGATTGCAGCTGTGACGGTAGCTTTGGTTGTGTTTGGATGGTTAGGAGCAGTGTTGGGGAAGGTACCAGCTTTTAGGTCTTGTATGAGGGTTTTGGTTGGGGGATGGCTGGCCATGGCTATAACTTTTGGACTAACCAAGCTGATTGGCTCAAGTGGGCTGTGA 624 52.56 MLETGSCESLVVGDDVEQQASQLENEAKEFDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEVAQRKRDKRRGEKENLPNPVQAAAASALAFAVGAMVPLLAASFIREYKVRLGAVIAAVTVALVVFGWLGAVLGKVPAFRSCMRVLVGGWLAMAITFGLTKLIGSSGL* 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 16184240 16187178 - Vvi18g1278 Vvi18g1278 780981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1278 207 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 23 204 IPR008217 GO:0005384|GO:0030026
Vvi18g1278 207 Pfam VIT family 113 199 IPR008217 GO:0005384|GO:0030026
Vvi18g1278 207 Pfam VIT family 39 113 IPR008217 GO:0005384|GO:0030026
Vvi18g1278 207 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 1-RELATED 23 204 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1278 K22736 - vvi:100263270 347.051