Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g1279 | ATGGATGGTTCTACGACGTCGTTTGAGGTTGAATCGTTGATAGGTTCGGATGGTGCGAAGAAGGCTATGGGACCTGATAGACTCGCAGAGCTTGCTTTGATCGATCCCAAGAGAGCTAAAAGGATTCTTGCAAATAGACAATCTGCTGCACGTTCAAAGGAGAGGAAAATACGCTATACTAATGAACTGGAGAGGAAGGTGCAGACACTTCAGACAGAAGCAACCACCCTCTCTGCACAGGTCACTATGCTACAGAGAGATACCACTGGACTGACTGCCGAGAATAAGGAACTCAAACTACGGTTGCAGGCCATGGAGCAACAGGCATCTCTTAGAGAAGCTCTAAATGAAGCATTGAGAGAAGAAGTACAGAGGCTTAAGATCGCAACTGGACAAATCCCAGCTGTCAATGGAAACAGTTTTAACAGAGGGCTGCCTCCACAGTTTTCCTCCCATCCTCAGGCTTTACATCATTTTGGTGCCCAGCAGCAGCAGCAGCAGCTTCACATGCCTCAATCATCTACCAACAACCAATCTCTAAATGGGCAGCCCCAGCCTAGCTTCTTGGACTTCAATCAGAGGGTTTGA | 588 | 47.62 | MDGSTTSFEVESLIGSDGAKKAMGPDRLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQASLREALNEALREEVQRLKIATGQIPAVNGNSFNRGLPPQFSSHPQALHHFGAQQQQQQLHMPQSSTNNQSLNGQPQPSFLDFNQRV* | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 16209618 | 16218061 | + | Vvi18g1279 | Vvi18g1279 | 780982 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g1279 | 195 | MobiDBLite | consensus disorder prediction | 159 | 195 | - | - | |
Vvi18g1279 | 195 | Coils | Coil | 88 | 132 | - | - | |
Vvi18g1279 | 195 | PANTHER | BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED | 1 | 188 | - | - | |
Vvi18g1279 | 195 | CDD | bZIP_plant_RF2 | 38 | 87 | IPR044759 | GO:0003700|GO:0006355 | |
Vvi18g1279 | 195 | SUPERFAMILY | Leucine zipper domain | 37 | 91 | IPR046347 | GO:0003700|GO:0006355 | |
Vvi18g1279 | 195 | Coils | Coil | 60 | 80 | - | - | |
Vvi18g1279 | 195 | SMART | brlzneu | 33 | 97 | IPR004827 | GO:0003700|GO:0006355 | |
Vvi18g1279 | 195 | Gene3D | - | 36 | 90 | - | - | |
Vvi18g1279 | 195 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 1 | 188 | - | - | |
Vvi18g1279 | 195 | Pfam | bZIP transcription factor | 37 | 85 | IPR004827 | GO:0003700|GO:0006355 | |
Vvi18g1279 | 195 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 35 | 98 | IPR004827 | GO:0003700|GO:0006355 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14276 | PF07716 | bZIP_2 | 1.50E-08 | CL0018 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g1279 | K20557 | - | vvi:100241011 | 359.377 |