Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1279 ATGGATGGTTCTACGACGTCGTTTGAGGTTGAATCGTTGATAGGTTCGGATGGTGCGAAGAAGGCTATGGGACCTGATAGACTCGCAGAGCTTGCTTTGATCGATCCCAAGAGAGCTAAAAGGATTCTTGCAAATAGACAATCTGCTGCACGTTCAAAGGAGAGGAAAATACGCTATACTAATGAACTGGAGAGGAAGGTGCAGACACTTCAGACAGAAGCAACCACCCTCTCTGCACAGGTCACTATGCTACAGAGAGATACCACTGGACTGACTGCCGAGAATAAGGAACTCAAACTACGGTTGCAGGCCATGGAGCAACAGGCATCTCTTAGAGAAGCTCTAAATGAAGCATTGAGAGAAGAAGTACAGAGGCTTAAGATCGCAACTGGACAAATCCCAGCTGTCAATGGAAACAGTTTTAACAGAGGGCTGCCTCCACAGTTTTCCTCCCATCCTCAGGCTTTACATCATTTTGGTGCCCAGCAGCAGCAGCAGCAGCTTCACATGCCTCAATCATCTACCAACAACCAATCTCTAAATGGGCAGCCCCAGCCTAGCTTCTTGGACTTCAATCAGAGGGTTTGA 588 47.62 MDGSTTSFEVESLIGSDGAKKAMGPDRLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQASLREALNEALREEVQRLKIATGQIPAVNGNSFNRGLPPQFSSHPQALHHFGAQQQQQQLHMPQSSTNNQSLNGQPQPSFLDFNQRV* 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 16209618 16218061 + Vvi18g1279 Vvi18g1279 780982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1279 195 MobiDBLite consensus disorder prediction 159 195 - -
Vvi18g1279 195 Coils Coil 88 132 - -
Vvi18g1279 195 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 1 188 - -
Vvi18g1279 195 CDD bZIP_plant_RF2 38 87 IPR044759 GO:0003700|GO:0006355
Vvi18g1279 195 SUPERFAMILY Leucine zipper domain 37 91 IPR046347 GO:0003700|GO:0006355
Vvi18g1279 195 Coils Coil 60 80 - -
Vvi18g1279 195 SMART brlzneu 33 97 IPR004827 GO:0003700|GO:0006355
Vvi18g1279 195 Gene3D - 36 90 - -
Vvi18g1279 195 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 188 - -
Vvi18g1279 195 Pfam bZIP transcription factor 37 85 IPR004827 GO:0003700|GO:0006355
Vvi18g1279 195 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 35 98 IPR004827 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14276 PF07716 bZIP_2 1.50E-08 CL0018 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1279 K20557 - vvi:100241011 359.377