Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g128 ATGTTTCTATTTATCAAGAAATTTCAGATCTTTTTCATAATTTTGAATTTGAATACTTATAGTTTCCTCAGTCCTCAGTCAAACCAAATTAAGGAAAAATTCAATTCCCAACAAAGTTTTCAAATCAAAGTCCAAGTCGCTAATAAAGATCATGGGAGCCATTTTCTTTTACACCATTCATCAGACGGAGAGAACGGGGAAGGTAGGAAGAGGCGTGGTTCACACATGGCGCACAATAGCGAGCTGATGGTCGATCCCAGGAGTGGGTTTTGCAGATCGAACTCCGTTTTTTATAGTAAACGTAATCCCGTTTCTCTGCCGCAGAAGGAGTTTATCGACGTCACCACCTTCATCTCTTCCCGGCCTCATCCTGGGAAGACGGCCTTCATCGACGCGGCCTCAGGCCACCGCCTCAGTTTCTACGAAGTCTGGAGAGCCGTCGATGCCGTGTCGAGTTGTCTCGCCGACATGGGGATCCGGAAAGGCCATGTCATCCTTTTGCTGTCTCCCAACTCCATTTTGTTCCCCATCGTTTGTCTCTCGGTGATGTCTCTCGGCGCCGTGATCACTACCACGAACCCACTCAACACGGCTCGCGAAATCGGCAAGCAGATAGCCGATTCCAAGCCTGTTCTTGCGTTCACGATTCCGTCACTCGTGCCCAAACTCGCGGGGTCGAATCTGCCCATTCCGAGTGGGAAGCGAGTCGGGGAGCGAGTTAACCAGGAGGACACGGCGACGCTGCTCTACTCGTCCGGCACCACCGGCGCGAGCAAAGGAGTGGTGTCGTCGCATAGAAACCTCATCGCCATGGTTCAGACCATCGTGAGCCGGTTCAGCTCCGAAGATGGAGAGCAGACCTTCATCTGCACCGTCCCCATGTTCCACATCTACGGCTTAGCGGCGTTCGCAATGGGTATGCTGGCGTCGGGATCAACGGTGGTGGTGCTCTCGAGATTCGAGATGGATGAGATGCTTTCTTCCATCTCCAAGTACCGAGCCACGTGCCTGCCTCTCGTGCCGCCCATACTGGTGGCGCTCGTTCACAGCGCTGATAAAATTAAGGCCAAGTACGATTTGAATTCTCTACAATCTACTCTCTCCGGTGGAGCTCCACTGAGCAAGGAGGTCATAGAGGGGTTCGCAGAAAAATACCCATCTGTGAAAATTCTTCAAGGATACGGCCTGACAGAGTCCACCGGCATCGGAGCTTCTACGGACTCTCTGGAGGAGAGCCGCCGGTACGGGACGGCGGGGCTGTTGTCGCCGAGCATGGAGGCTAAGATCGTGGACCCAGGAAGTGGAAAGGCATTGACGGTGAACCAGACCGGAGAGCTTTGGCTGAGAGGTCCCACCATTATGAAAGCCTTTGTGTTATACCGTGCTTACTTTTTCACAGGGATTTCCTACTTTACCACATGGTGTTACCGAGGGTGGATTTTGGAAATGAAATTTTATTTGAGAACTCAAATATTTGGCTTATTCAATGTAAAAGTTACTCATCCTTCCTCATGTTATTTCAGTAATCCAGAAGTGACTACATCCACTCTTGATTCAAGTGGATGGTTGAGAACTGGAGATCTCTGCTACATCGATGATGATGGATTCATTTTCATTGTTGATAGGTTGAAGGAGCTGATCAAATACAAAGGATATCAGGTTCCTCCAGCTGAACTAGAGGCCTTGTTACTTACTCACCCAGAGATTGCTGATGCTGCTGTTATACCATTCCCAGATAAGGAAGTGGGGCAATATCCTATGGCATACATTAATAGAAAAGCAGGAAGCAATCTGTCCGAGTCTGCGGTCATGGATTTCATAGCAAAACAGGTGGCTCCATACAAGAGAATCCGGCGAGTCGCATTTGTAGATTCCATTCCCAAAAATGCATCAGGCAAGATTCTGAGGAAGGATCTCATACAACTTGCAACCTCCAAACTCTGA 1944 49.28 MFLFIKKFQIFFIILNLNTYSFLSPQSNQIKEKFNSQQSFQIKVQVANKDHGSHFLLHHSSDGENGEGRKRRGSHMAHNSELMVDPRSGFCRSNSVFYSKRNPVSLPQKEFIDVTTFISSRPHPGKTAFIDAASGHRLSFYEVWRAVDAVSSCLADMGIRKGHVILLLSPNSILFPIVCLSVMSLGAVITTTNPLNTAREIGKQIADSKPVLAFTIPSLVPKLAGSNLPIPSGKRVGERVNQEDTATLLYSSGTTGASKGVVSSHRNLIAMVQTIVSRFSSEDGEQTFICTVPMFHIYGLAAFAMGMLASGSTVVVLSRFEMDEMLSSISKYRATCLPLVPPILVALVHSADKIKAKYDLNSLQSTLSGGAPLSKEVIEGFAEKYPSVKILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSMEAKIVDPGSGKALTVNQTGELWLRGPTIMKAFVLYRAYFFTGISYFTTWCYRGWILEMKFYLRTQIFGLFNVKVTHPSSCYFSNPEVTTSTLDSSGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDKEVGQYPMAYINRKAGSNLSESAVMDFIAKQVAPYKRIRRVAFVDSIPKNASGKILRKDLIQLATSKL* 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1252316 1257960 + Vvi18g128 Vvi18g128 779831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g128 647 Gene3D - 496 544 IPR042099 -
Vvi18g128 647 Gene3D - 94 459 IPR042099 -
Vvi18g128 647 SUPERFAMILY Acetyl-CoA synthetase-like 121 464 - -
Vvi18g128 647 Gene3D - 545 646 IPR045851 -
Vvi18g128 647 PANTHER BNAA06G14440D PROTEIN 503 646 - -
Vvi18g128 647 PANTHER BNAA06G14440D PROTEIN 61 223 - -
Vvi18g128 647 PANTHER BNAA06G14440D PROTEIN 231 457 - -
Vvi18g128 647 Pfam AMP-binding enzyme C-terminal domain 558 633 IPR025110 -
Vvi18g128 647 CDD 4CL 106 639 - -
Vvi18g128 647 ProSitePatterns Putative AMP-binding domain signature. 248 259 IPR020845 -
Vvi18g128 647 SUPERFAMILY Acetyl-CoA synthetase-like 497 644 - -
Vvi18g128 647 Pfam AMP-binding enzyme 121 456 IPR000873 -
Vvi18g128 647 Pfam AMP-binding enzyme 503 549 IPR000873 -
Vvi18g128 647 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 503 646 - -
Vvi18g128 647 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 61 223 - -
Vvi18g128 647 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 231 457 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g128 K10526 - vvi:100243654 974.541