Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1283 ATGGGAAGAGAAGAGGAGGAGAAGAGGAGCAAAGAGATTGTGCTTGGGCGAAACGTGCACACCACGTGCCTTGCCGTCACGGAGCCCGATGCCAATGACGAATTTACTGGTGATAAGGAGGCTTATATGGCTAGTGTGTTGGCTAGGTATCGGAAGACTCTGATGGAAAGAACGAAGCACCATTTAGGTTATCCATATAATCTGGATTTCGACTATGGTGCTCTGTCACAGTTGCAACATTTCTCCATCAATAATCTTGGTGATCCATTTATTGAGAGTAACTATGGTGTCCATTCGAGACAGTTTGAAGTTGGTGTTTTGGATTGGTTTGCCCGTCTATGGGAAATAGAAAAAGATGAATACTGGGGGTACATCACTAATTGTGGCACAGAAGGCAATCTTCATGGAATCTTAGTCGGGCGAGAAGTGCTTCCTGATGGGATTCTCTATGCATCACAAGAGACACATTATTCTGTCTTTAAAGCAGCACGGATGTATAGAATGGAATGTGTGAAGGTTGCCACTTCACTTTCGGGGGAGATTGATTGTGCAGATTTTAAGGCTAAACTACTGGCTAACAAGGACAAACCAGCCATCATTAATGTTAACATAGGAACAACTGTCAAGGGAGCCGTAGATGACCTTGATCTTGTAATAGAGACTCTCGAAGAATGTGGGTTTACACATGATCGGTTCTATATTCACTGTGACGGAGCTCTATTTGGACTCATGATGCCTTTTGTCAAACGCGCACCAAAGGTAACTTTCAAGAAACCCATAGGAAGTGTGAGTGTCTCTGGCCACAAGTTTGTGGGCTGTCCAATGCCTTGTGGCGTTCAGATAACAAGGATGGAGCATATCAATGCGCTCTCAAGGAATGTGGAGTACCTGGCTTCAAGGGATGCCACAATTATGGGTAGCCGGAATGGCCATGCTCCAATCTTTCTCTGGTACACTCTGAACAGGAAAGGTTACAAGGGTTTCCAGAAAGAAGTTCAGAAGTGCCTTAGAAATGCTCACTACTTGAAGGACCGCCTCCGAGATGCTGGAATCAGTGCCATGCTTAATGAGCTCAGCAGCACGGTTGTGTTTGAACGGCCCGTTGATGATGAGTTTGTCCGCAGGTGGCAACTTGCATGCCAGGGGAATATTGCGCATGTTGTGGTTATGCCCAATGTCACCATTGAGAAGCTGGACTATTTCTTAGATGAGCTGATTGAAAAGCGAAACACTTGGTTTCTGGATAAAAAAGTTCAACCTCCTTGTGTTGCAGCAGACATAGGGAGTGAGAATTGTTTGTGTGATCTGCATAAGTGA 1317 45.1 MGREEEEKRSKEIVLGRNVHTTCLAVTEPDANDEFTGDKEAYMASVLARYRKTLMERTKHHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKDEYWGYITNCGTEGNLHGILVGREVLPDGILYASQETHYSVFKAARMYRMECVKVATSLSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIETLEECGFTHDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLRDAGISAMLNELSSTVVFERPVDDEFVRRWQLACQGNIAHVVVMPNVTIEKLDYFLDELIEKRNTWFLDKKVQPPCVAADIGSENCLCDLHK* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 16285606 16288125 - Vvi18g1283 Vvi18g1283 780986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1283 438 Pfam Pyridoxal-dependent decarboxylase conserved domain 148 361 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vvi18g1283 438 PANTHER - 4 438 - -
Vvi18g1283 438 Gene3D - 76 320 IPR015421 GO:0003824
Vvi18g1283 438 PANTHER SERINE DECARBOXYLASE 4 438 - -
Vvi18g1283 438 Gene3D Aspartate Aminotransferase, domain 1 321 410 IPR015422 GO:0003824
Vvi18g1283 438 SUPERFAMILY PLP-dependent transferases 44 407 IPR015424 -
Vvi18g1283 438 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 262 283 IPR021115 GO:0016831
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1283 K25193 SDC; serine decarboxylase [EC:4.1.1.-] - vvi:100258141 906.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00126 . . Bda13g01409 . . . Bma02g00148 . . . . . . Car15g00556 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004732 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 3 1 1 2 1 1 1 3 1 1 42