Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1286 ATGATAAAAATTTTCTATAATGTCAATCTAAATTATTTTGAAGAAAACTTAATTAATTACTCAAGGTCTACTGGTGCAATGGGAAGGAAGAAAACAGAGGATAGTGGTGCAACCACAAAGGTTAAGCCTAGCAACAAAGATGCCTCCAAGGATGGGAAGAAAGAGAAGCTCTCAGTTTCAGCGATGCTTGCTAGCATGGACCAGAAATCTGATAAACCCAAAAAGGGATCTTCCTCCTCAAGCACTACCACTAGCAAGCCCAAAGCAAAAGCAGCTCCAAAACTTCCATCCTACACTGCTGACATCGACCTCCCTCCCTCTGATGATGAGGATGATGCTTATTCCTCTGAAGAAGACGCACGACTTAAGCGGCAACAAAGGGCTGAACTAAAGACACTTGACATATCCGTAACTGAAAAGGAATTGAAGAAACGTGAAAAGAAAGACATGCTTGCTGTCCATGCCTCACAGCAGGCCCGACAGGAGGCCCTTAAGGATGATCATGATGCATTCACCGTTGTTATTGGTAGCCGGGCTTCAGTTCTTGATGGCGAAGATGAAGCTGATGCTAATGTCAAAGATGTAACGATAGAAAACTTTTCTGTGTCAGCACGTGGGAAAGAACTCTTAAAGAATGCATCAGTGAAGATATCTCATGGGAAGAGGTATGGTTTAGTTGGACCAAATGGGATGGGAAAATCTACATTATTAAAACTTCTTGCTTGGAGGAAGATTCCAGTACCTAAAAATATTGATGTACTACTGGTTGAGCAAGAGGTGATTGGTGACGATAATACTGCCCTTCAGGCAGTTATTTCAGCGAACGAAGAGCTGGTCAGGCTCCGACAGGAAGATGAAAATGATGCTCAGGCATCAAAGATTCTTGCTGGACTGGGTTTCACTAAGGATATGCAGGGCCGTGCAACCCGGTCATTTAGTGGTGGGTGGAGGATGAGAATTTCATTGGCTAGGGCACTCTTTGTGCAGCCAACTCTTCTATTGCTTGATGAACCCACCAACCATCTTGACCTGAGGGCTGTTCTCTGGTTAGAGGAGTACTTGTGCCGGTGGAAGAAAACTCTTGTTGTCGTCTCGCATGATCGGGATTTTCTTAACACGGTTTGTAGTGAGATTATTCATCTCCATGACCAGAAACTTCATTTCTACCGGGGGAACTTTGATGATTTTGAAAGTGGGTATGAGCAGCGTCGCAAGGAGATGAATAAGAAAGATTACAGTGTGGAGTTCCACTTCCCTGAACCCACTGAGCTATCGGATGTTGATGTTGGTATTGATATGGGGACTCGTGTTGCCATTGTTGGACCCAATGGAGCTGGGAAATCTACATTGCTTAATCTTCTTGCTGGTGATTTGGTTCCGACGGAGGGTGAAGTACGAAGGATTCAGTATCTTCTCAGGCTTCATCCAGATCAGGAGGGACTTAGCAAGCAGGAAGCCGTTCGTGCAAAGCTTGGGAAATTTGGGCTTCCCAGTCATAACCACCTCACCCCAATTATGAAACTATCGGGAGGGCAGAAAGCACGGGTTGTCTTCACATCAATTTCTATGTCAAAACCACACATTTTGCTGTTGGATGAGCCTACAAATCATCTAGACATGCAGAGCATTGATGCATTGGCTGATGCACTAGATGAGTTCAGTGGTGGAGTGGTGCTTGTAAGTCATGATTCGCGGTTAATATCTCGTGTGTGTGAGAACGAGGAGAGAAGTGAAATTTGGGTGGTAGAAAACGGAACTGTGAGTAGTTTCCCTGGATCATTTGAGGAGTACAAGGAAGAGCTACAGAGAGAGATCAAAGCAGAGAAAAAGCAATTGGGTCCATTGCTGAACTATAGTTAA 1860 44.41 MIKIFYNVNLNYFEENLINYSRSTGAMGRKKTEDSGATTKVKPSNKDASKDGKKEKLSVSAMLASMDQKSDKPKKGSSSSSTTTSKPKAKAAPKLPSYTADIDLPPSDDEDDAYSSEEDARLKRQQRAELKTLDISVTEKELKKREKKDMLAVHASQQARQEALKDDHDAFTVVIGSRASVLDGEDEADANVKDVTIENFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVIGDDNTALQAVISANEELVRLRQEDENDAQASKILAGLGFTKDMQGRATRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKDYSVEFHFPEPTELSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRIQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIMKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFSGGVVLVSHDSRLISRVCENEERSEIWVVENGTVSSFPGSFEEYKEELQREIKAEKKQLGPLLNYS* 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 16302856 16307318 + Vvi18g1286 Vvi18g1286 780989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1286 619 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 31 284 - -
Vvi18g1286 619 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 468 608 - -
Vvi18g1286 619 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 424 469 - -
Vvi18g1286 619 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 285 410 - -
Vvi18g1286 619 Gene3D - 471 613 IPR027417 -
Vvi18g1286 619 Gene3D - 175 412 IPR027417 -
Vvi18g1286 619 SMART AAA_5 433 586 IPR003593 -
Vvi18g1286 619 SMART AAA_5 219 392 IPR003593 -
Vvi18g1286 619 MobiDBLite consensus disorder prediction 25 125 - -
Vvi18g1286 619 Gene3D - 413 470 IPR027417 -
Vvi18g1286 619 Pfam ABC transporter 424 536 IPR003439 GO:0005524
Vvi18g1286 619 Pfam ABC transporter 210 340 IPR003439 GO:0005524
Vvi18g1286 619 ProSitePatterns ABC transporters family signature. 312 326 IPR017871 GO:0005524
Vvi18g1286 619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 609 IPR003439 GO:0005524
Vvi18g1286 619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 195 408 IPR003439 GO:0005524
Vvi18g1286 619 CDD ABCF_EF-3 195 385 - -
Vvi18g1286 619 CDD ABCF_EF-3 414 586 - -
Vvi18g1286 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 397 IPR027417 -
Vvi18g1286 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 590 IPR027417 -
Vvi18g1286 619 PANTHER - 468 608 - -
Vvi18g1286 619 PANTHER - 424 469 - -
Vvi18g1286 619 PANTHER - 285 410 - -
Vvi18g1286 619 PANTHER - 31 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1286 K06184 ABCF1; ATP-binding cassette, subfamily F, member 1 - jre:109000441 866.685
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1159 Vvi18g1286 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1286 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002655 2 2 2 3 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 2 3 3 2 0 2 2 2 58