Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1288 ATGGCGGATAAAGACCCAGATTGCTGTTTCCAGAAACTGCCCTCTGTAACTCAGGTGGTGGAAGAGCTGAATGAGCTATGGAGCATGGCCTTGCCCATAACAGCCATGAACTGCCTGGTCTACGTCAGAGCTGCTGTGTCGGTTCTCTTCCTGGGAAGGCTCGGAAGACTGGAGCTGGCCGGGGGCGCCCTTTCCATCGGATTCACCAACATCACCGGCTACTCCGTGCTGGTGGGCCTGGCTTCGGGGCTGGAACCAGTGTGCAGCCAGGCCTATGGCAGTAAAAACTGGGAACTGCTGTCGCTGTCGCTGGTGCGGATGGTTCTGATTCTGGGAGTGGCAATCATTCCCATAAGCTTCCTGTGGGTGAATTTGGATAGGGTGATGGTGGCGATGGGGCAGGACAAGGAGATAACGGCAATGGCAGCGAGATATTGTCTGTACTCGCTTCCGGACCTGGCGACGAATACGTTGCTGCAGCCGCTGAGGGTGTACCTGAGGTCGCAAAGGGTGACGAAGCCGATGATGTACTGCTCGCTGGTGGCAGTGGCATTGCACGTGAAATGGAGGGTTGGGATAGGCGGGGTGTGTGGTGGGGTGGGCCCACTCCTGAAACTGGCAGTGCCCAGCTGTATCGGGATATGTTTGGAGTGGTGGTGGTACGAGATCGTCACCGTCCTTGCTGGGTACTTGCCGAATCCCACACTCGCTGTGGCCGCCACTGGGATTCTCATTCAGACCACTTCCTTCATGTACACTGTCCCCATGGCTCTTGCTGGCTGTGTCTCTGCCAGAGTAGGGAATGAGCTGGGAGGCGGGAAGCCGAACAGGGCGAAGCTGGCAGCCATGGTGGCATTGGGATGCGCGTTCCTGATCGGGATCATCAACGTCATATGGACGGTGATCTTTAGGGAAAAGTGGGCAGGGGTGTTCACAAAGGATGAAATGGTCAAGGCCTTGGTCGCATCAGTCATGCCGCTGATGGGGGTGTGCGAGCTCGGAAACTGCCCCCAGACCACCGGCTGCGGCATCCTGCGCGGCACGGCCAGGCCGGCCGTGGGCGCCCGCATCAACCTGGGCTCCTTTTACTTTGTTGGCACCCCGGTGGCCGTTGGCCTGGCCTTCTGGCTCAAGGTGGGCTTCAGTGGGCTCTGGTATGGGCTCCTCTCAGCCCAGGTGGCCTGCGCCATTTGGATTCTCTACGTCGTCCTGATGCGTACGGACTGGGAAGCCGAGGCTACCAAAGCCAAGAAGCTCACAAGCTTGGAAATGGCCACGTCTTGTGATGGGGTAGTCAGAAATGAGGAACAGGAAGAGGGTGATGATAATGAGAGCAGAGGGTTGTTGCTGAGTGAGGGTGATATCTTGTAG 1371 57.84 MADKDPDCCFQKLPSVTQVVEELNELWSMALPITAMNCLVYVRAAVSVLFLGRLGRLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWELLSLSLVRMVLILGVAIIPISFLWVNLDRVMVAMGQDKEITAMAARYCLYSLPDLATNTLLQPLRVYLRSQRVTKPMMYCSLVAVALHVKWRVGIGGVCGGVGPLLKLAVPSCIGICLEWWWYEIVTVLAGYLPNPTLAVAATGILIQTTSFMYTVPMALAGCVSARVGNELGGGKPNRAKLAAMVALGCAFLIGIINVIWTVIFREKWAGVFTKDEMVKALVASVMPLMGVCELGNCPQTTGCGILRGTARPAVGARINLGSFYFVGTPVAVGLAFWLKVGFSGLWYGLLSAQVACAIWILYVVLMRTDWEAEATKAKKLTSLEMATSCDGVVRNEEQEEGDDNESRGLLLSEGDIL* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 17293486 17296105 + Vvi18g1288 Vvi18g1288 780991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1288 456 Pfam MatE 209 370 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi18g1288 456 Pfam MatE 32 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi18g1288 456 PANTHER PROTEIN DETOXIFICATION 194 430 - -
Vvi18g1288 456 PANTHER PROTEIN DETOXIFICATION 12 188 - -
Vvi18g1288 456 MobiDBLite consensus disorder prediction 433 456 - -
Vvi18g1288 456 CDD MATE_eukaryotic 22 415 IPR045069 GO:0042910|GO:1990961
Vvi18g1288 456 PANTHER MULTIDRUG RESISTANCE PROTEIN 194 430 - -
Vvi18g1288 456 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1288 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - vvi:100264851 870.537
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1288 Blo01g01755 . . . Bpe02g00187 . . Bma01g02538 . . . Cma09g01151 Car01g00842 . . Cpe06g00926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01162 . . . . . . Bhi09g01574 Tan01g3001 . . . . . Cla09g00968 Cam09g1019 Cec09g1023 Cco09g1034 . . Cre09g0985 . . . Cme01g00744
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006122 0 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 5 1 39