Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1289 ATGGACGCATCATTTTCAGATAATCTCACAGGTTTCATTCTCGCCGTCGTCTCCAGCGCCTTCATCGGATCCAGCTTCATCATCAAGAAGAAAGGTCTCCAGCGAGCCGCCGCGTCGGGGCCTCCAGCCAGTTCGGGTGGATACGGGTATTTATTAGAGCCACTTTGGTGGATTGGCATGGTGACGATGATTGTTGGGGAAATTGCCAATTTTGTAGCCTACATTTTCGCCCCTGCTGTGCTTGTAACGCCACTTGGAGCATTGAGTATAATTGTTAGTGCTGTTTTAGCACACTTCTTACTGAAAGAGAAACTGCGTAAAATGGGGATATATGGGTGTGTTCTGTGTATAGTGGGGTCTACACTGATTGTTCTTCATGCACCTAGTGAACATAGTTTGAGTTCAGTCGAAGAAATCTGGGAGTTAGCAACTCAACCAGCCTTTCTTTTGTACACGGCCTCAGCAATAGCTGTAGTTTTGGTCTTGGTGTTGTATTGTGAACCACGCTATGGACAGACAAATATAATGGTTTATATTGGCATATGTTCCATAATTGGATCTCTGACGGTTATGAGTATTAAAGCTATAGGCATTGCAATAAAACTCACGTTGGAGGGTTCAAGCCAGGTAGCTCACTTCCAAACATGGGTTTTTGCAATGGTTGCTATTACCTGTATTATCACTCAGTTGAATTATTTAAACAAGGCTTTGGATACATTCAACACAGCGGTTGTTTCTCCAATATATTATGCTCTGTTCACATCATTCACAATTTTGGCCAGTGCCATAATGTTCAAGGATTGGTCTGGTCAGAGTGCTAGCAGTATTGTTTCAGTGCTGTGTGGATTCATAACTGTGCTTTCTGGCACTATGGTTTTGCATAGTACAAGAGAACCAGATCCACCTCTTATTACAGATGTGTATTCATCTCTTCCTCAAATATCCTGGCTTGTCCAAGTAAATGGTAACATTTGGAAGCAGAAGGATGATGATGAGGTATCCCCTGATTTCATCACAATTCTTCGGCAAGACCATTTCAAATAG 1044 42.62 MDASFSDNLTGFILAVVSSAFIGSSFIIKKKGLQRAAASGPPASSGGYGYLLEPLWWIGMVTMIVGEIANFVAYIFAPAVLVTPLGALSIIVSAVLAHFLLKEKLRKMGIYGCVLCIVGSTLIVLHAPSEHSLSSVEEIWELATQPAFLLYTASAIAVVLVLVLYCEPRYGQTNIMVYIGICSIIGSLTVMSIKAIGIAIKLTLEGSSQVAHFQTWVFAMVAITCIITQLNYLNKALDTFNTAVVSPIYYALFTSFTILASAIMFKDWSGQSASSIVSVLCGFITVLSGTMVLHSTREPDPPLITDVYSSLPQISWLVQVNGNIWKQKDDDEVSPDFITILRQDHFK* 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 17367996 17396611 + Vvi18g1289 Vvi18g1289 780992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1289 347 PANTHER UNCHARACTERIZED 5 347 IPR008521 GO:0015095|GO:0015693|GO:0016021
Vvi18g1289 347 PANTHER MAGNESIUM TRANSPORTER-RELATED 5 347 - -
Vvi18g1289 347 SUPERFAMILY Multidrug resistance efflux transporter EmrE 54 127 - -
Vvi18g1289 347 Pfam Magnesium transporter NIPA 7 298 IPR008521 GO:0015095|GO:0015693|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1289 K22733 NIPA, SLC57A2S; magnesium transporter - vvi:100254444 638.647
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1289 Blo01g01754 Blo12g00765 . Bda03g00417 Bpe02g00188 . . Bma01g02537 . . Cma01g00941 . . . . Cpe06g00921 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00847 . . . . . . Cmo01g00981 . . . . . . . Bhi09g01565 Tan01g2974 . . . . . Cla09g00961 Cam09g1013 Cec09g1016 Cco09g1028 . . Cre09g0976 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000928 3 9 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 2 2 2 2 2 2 6 7 3 86