Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1290 ATGGATCTTCCATGTCTAGTTCTACCCCTCTCCATCCTCCTCCTCTTCTCCTCCGCGGTCTCTTCCGCGGATATCCCCCTCGGTGCCAGCATCACCGCCTCCGACCTCAACCAAACCTGGAACTCCCCCAACTCCACCTTCTCTCTTGGCTTCATCGCCGCCACACCCACCTCCTTCTATGCCGCCATCACCTACGGCGGCGTCCCCATCTGGAGGGCCGGTGGTGCCTACCCTGTCGCCGTTGACTTCGGCGGATCCTTCCGGTTCCTCACTTCCGGTAACCTCCACCTAGTAAGCAGCAACGGCACCGTCCTCTGGGAATCCGGCACCGCTGGCCGCGGCGTCTCCTCCGCCACCCTCTCTGACTCAGGTAACCTTGTTCTTACAAACGGCACCGTTTCTGTCTGGTCCACTTTCGAAAACCCAACAGATACGATTGTTCCCACGCAAAATTTCACGACTTCCAACTCTTTGCGATCTGGGTTATACTCATTTAGTTTAACTAAGTCTGGAAATCTCACTCTTACCTGGAATAGCAGCATATTGTATTGGAGTAAGGGCTTGAACTCTACAGTTGATAAAAACTTGACTTCACCCAGTTTAGGCCTTCAATCAATTGGGATTTTATCACTTTCTGATCTCACATTATCCACTTCTGTAGTTTTGGCTTACAGCAGTGATTATGCTGAAGGCAGTGATCTACTCAGGTTTGTGAGGTTAGATAGTGATGGGAATTTGAGAATTTATAGCTCCGATAGTGGTAGTGGAATCTCGAATGTGAGATGGGCTGCTGTTGAGGACCAATGTGAGGTTTTCGGATATTGCGGAAACCTAGGTATTTGTAGTTATAATGATTCCACTCCGGTTTGCGGGTGCCCATCTGAGAATTTTGAGCTTGTTGATCCCAAGGATAGTACTAAGGGGTGTAAGAGGAAGGAGGAGATTGAGAATTGTCCTGGGGATTTGACCATGTTGGAGTTGCAGCATGCCAAGTTCTTGACCTACTCTTCTGAGCTCTCCTCACAGGTTTTCTTCGTTGGGATATCGGCCTGTAGGTTGAATTGTCTTGTGGGTGGGTCTTGTATTGCTTCAACTTCACTGTCAGATGGCACAGGGTTGTGTTACTTGAAAGTGCCTGGTTTTGTTAGCGGGTACCAGTCGCCTGCACTGCCTAGTACTTCTTATGTTAAGGTTTGTGGGCCTGTGGTGCCGAACCCCTCTGCTTTTTCCCATGGAGATGATGGGGCGTGGAAGTTGCATGCGTGGATAGTTGCTGTTGTGGTTTTGGGTACTCTTGCTGCTTTGGTTTTGTTGGAGGGTGGTTTGTGGTGGTGGTGCTGTAAAAACAGCCCCAAATTTGGGGGATTATCAGCTCAATATGCACTTCTTGAGTATGCATCTGGTGCCCCTGTGCAGTTCTCATACAAGGAACTCCAGCGCTCAACAAAGGGGTTCAAGGAGAAGCTTGGAGCAGGAGGATTTGGGGCTGTCTACAGAGGGATTCTTGCTAACAGAACCATTGTTGCAGTGAAACAACTTGAGGGCATTGAACAGGGGGAGAAACAGTTCAGGATGGAGGTTGCAACCATAAGTAGCACCCACCATTTGAATTTGGTGAGGTTGATTGGTTTCTGCTCTGAGGGACGTCACAGGCTTCTGGTGTACGAGTTCATGAAAAATGGGTCTCTCGATACCTGCCTCTTTCCCACAGAAGGACATTCAGGGAGATTGTTAAACTGGGAAAACCGATTTAGCATAGCCCTAGGAACTGCAAGGGGTATCACATACCTTCATGAGGAGTGTCGAGACTGTATTGTCCACTGTGATATAAAGCCTGAAAACATTCTGTTGGATGAGAATTATAATGCCAAAGTGTCAGATTTTGGCCTTGCAAAGCTCATAAATCCTAAGGACCATAGGTACCGAACCTTGACAAGTGTTAGAGGAACTAGAGGATATTTGGCACCAGAATGGCTTGCAAATCTTCCAATCACTTCAAAATCTGATGTTTACAGCTATGGTATGGTTCTATTGGAGATAGTGAGCGGGAAAAGGAATTTTGAAGTCTCAGCGGAAACTAACAGGAAAAAGTTTTCATTGTGGGCTTATGAAGAGTTTGAGAAGGGAAACATGGAGGGAATAGTGGACAAGAGGCTCGGTGACCAGGGGGTGGACATGGAGCAAGCGAAGAGAGCAATCCAGGTGAGCTTTTGGTGCATCCAGGAGCAGCCATCTCAGAGGCCAATGATGGGGAAAGTAGTCCAAATGCTGGAAGGAGTCACAGAGATTGAGAGGCCACCAGCCCCAAAGGCTGCTATGGAAGTATCTGCTGGTGGGACTAGCATAAACGTGAGCAGTAATGTAAGCGCACTATCCACCTTTGCAGCTTCAGCCCCAGCTCCCTCATCATCATCATCAATGCAAAACGCAGGATTTTCATCAATTGTTTTAGGGAGGAATGTGGAGAAATCATCCTCATCTGTTACAGGGAGGAACGTGGAGAGAGCCTCTTCATCCCTCTTACACTCAGAGAACCAAGGCTTGAACTCTTCAATCAGTAGCAATTTGACTTCACCCAGTTTTGGAATTCAATTACTTGGGATTTTAACACTTTCTGATCCCACATTATCCGCCTCTATATTATGGCTTACAGTAGTGATTATGCTGAAGGCAGTGATATGCTCAGATTTTCTGACAAAGAAGTACGATCAATGGTTAAAGAGTGATGGTATCTTAAATCTAAAAAATGCAGTGTTGGTAAATTCCACGTGCTTATATAAATAA 2784 47.09 MDLPCLVLPLSILLLFSSAVSSADIPLGASITASDLNQTWNSPNSTFSLGFIAATPTSFYAAITYGGVPIWRAGGAYPVAVDFGGSFRFLTSGNLHLVSSNGTVLWESGTAGRGVSSATLSDSGNLVLTNGTVSVWSTFENPTDTIVPTQNFTTSNSLRSGLYSFSLTKSGNLTLTWNSSILYWSKGLNSTVDKNLTSPSLGLQSIGILSLSDLTLSTSVVLAYSSDYAEGSDLLRFVRLDSDGNLRIYSSDSGSGISNVRWAAVEDQCEVFGYCGNLGICSYNDSTPVCGCPSENFELVDPKDSTKGCKRKEEIENCPGDLTMLELQHAKFLTYSSELSSQVFFVGISACRLNCLVGGSCIASTSLSDGTGLCYLKVPGFVSGYQSPALPSTSYVKVCGPVVPNPSAFSHGDDGAWKLHAWIVAVVVLGTLAALVLLEGGLWWWCCKNSPKFGGLSAQYALLEYASGAPVQFSYKELQRSTKGFKEKLGAGGFGAVYRGILANRTIVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDTCLFPTEGHSGRLLNWENRFSIALGTARGITYLHEECRDCIVHCDIKPENILLDENYNAKVSDFGLAKLINPKDHRYRTLTSVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLEIVSGKRNFEVSAETNRKKFSLWAYEEFEKGNMEGIVDKRLGDQGVDMEQAKRAIQVSFWCIQEQPSQRPMMGKVVQMLEGVTEIERPPAPKAAMEVSAGGTSINVSSNVSALSTFAASAPAPSSSSSMQNAGFSSIVLGRNVEKSSSSVTGRNVERASSSLLHSENQGLNSSISSNLTSPSFGIQLLGILTLSDPTLSASILWLTVVIMLKAVICSDFLTKKYDQWLKSDGILNLKNAVLVNSTCLYK* 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 17409919 17427601 - Vvi18g1290 Vvi18g1290 780993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1290 927 ProSiteProfiles Bulb-type lectin domain profile. 16 141 IPR001480 -
Vvi18g1290 927 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 188 IPR036426 -
Vvi18g1290 927 Gene3D - 140 264 IPR036426 -
Vvi18g1290 927 Pfam Protein kinase domain 486 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1290 927 PANTHER G-TYPE LECTIN S-RECEPTOR SERINE/THREONINE-PROTEIN KINASE 9 821 - -
Vvi18g1290 927 Gene3D Transferase(Phosphotransferase) domain 1 558 772 - -
Vvi18g1290 927 SMART blect_4 33 142 IPR001480 -
Vvi18g1290 927 SUPERFAMILY Protein kinase-like (PK-like) 466 758 IPR011009 -
Vvi18g1290 927 SMART serkin_6 483 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1290 927 PANTHER OS07G0415500 PROTEIN 9 821 - -
Vvi18g1290 927 ProSiteProfiles Bulb-type lectin domain profile. 143 261 IPR001480 -
Vvi18g1290 927 ProSiteProfiles Protein kinase domain profile. 483 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1290 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Vvi18g1290 927 Pfam S-locus glycoprotein domain 219 293 IPR000858 GO:0048544
Vvi18g1290 927 Pfam D-mannose binding lectin 70 156 IPR001480 -
Vvi18g1290 927 Gene3D - 24 139 IPR036426 -
Vvi18g1290 927 Gene3D Phosphorylase Kinase; domain 1 457 557 - -
Vvi18g1290 927 CDD STKc_IRAK 489 759 - -
Vvi18g1290 927 ProSitePatterns Protein kinases ATP-binding region signature. 489 511 IPR017441 GO:0005524
Vvi18g1290 927 PIRSF SRK 1 816 IPR024171 GO:0004674
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1290 - - - vvi:100252926 1600.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1249 Vvi18g1290 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1290 . . . . . . . . . . . . . . . . Cpe13g00715 . . . . . . . . . . . . . . . . . . . . . Cme03g01093 . . . Bda01g01467 . . . . . . . . . . Car15g00518 . . . . . . . . . . . . . . . . Lsi08g00607 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010545 1 1 0 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76347 PF00069 Pkinase 1.90E-51 CL0016 Vvi PK