Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1291 ATGTTTGTGTTTGGAAGCTCTCTAGTGGACACTGGCAACAACAACTTCCTCCAAACAACAACCAGGGCTGATTTTTTGCCTTACGGAATCGACTTCCCAGGTGGGCCTTCTGGTAGATTCACCAATGGCAAGAACGTTGTTGACCTCATTGGCGACCACCTTCACCTTCCTTCCATTCCTCCTTTTTCCAGTCCTGCAACAAAGGGAGCTGCAATTGTACGTGGGGTAGACTTTGCTTCTGGAGGCTCTGGCATACTCGATACCACTGGCTCCTTTTTGGGTGAAGTGACAAGCCTAAACCAACAAATCAGAAACTTTGAGAAGGTGACACTGCCTGATTTGGAAGCTCAACTGGGGGTGAAGAGCAGCGAATCACTTTCAAGCTACTTGTTTGTCGTGGGAGTTGGGGGAAATGATATCACCTTCAACTACTTTCTGCACGCCATCAACAGCAATATCAGTCTTCAAGCCTTCACTATCACCATGACAACCCTGCTATCTGCTCAACTCAAGAAACTGCACAGTTTGGGAGGTCGGAAGTTTGCTTTGATGTCTGTAAATCCACTGGGGTACACCCCCATGGCTATCCAGCTTCCAAGTAAGGTTTACGCCAATCGATTGAACCAAGCGGCTCGCCTCTTCAATTTCCGACTCAAGTCATTGGTAGATGAAATGGAGGCTGAAATGCCTGGTTCTCAGCTTGTTCTTGTCAACACATATCAGATTATAAATACTATCATAAAAAATCCTAAGGCCAAAGGTTTCAAGGACACGACCAGTCCCTGTTGCGAAGTAAAATCCAGCGTTTCGAGCTCAATACTATGCAAAAGAGGAGGGGAGGCGTGTGGAAATAGGAGCAGTTACGTGTTCTTTGATGGACTGCATCCAACAGAAGCAGTGAACGCCATAATAGCATCCAGGGCCTATCATTCTAATGATTCAGATCTCGTTTATCCCACTAATATCAAACACCTTGCCAATCTCTAG 987 46.1 MFVFGSSLVDTGNNNFLQTTTRADFLPYGIDFPGGPSGRFTNGKNVVDLIGDHLHLPSIPPFSSPATKGAAIVRGVDFASGGSGILDTTGSFLGEVTSLNQQIRNFEKVTLPDLEAQLGVKSSESLSSYLFVVGVGGNDITFNYFLHAINSNISLQAFTITMTTLLSAQLKKLHSLGGRKFALMSVNPLGYTPMAIQLPSKVYANRLNQAARLFNFRLKSLVDEMEAEMPGSQLVLVNTYQIINTIIKNPKAKGFKDTTSPCCEVKSSVSSSILCKRGGEACGNRSSYVFFDGLHPTEAVNAIIASRAYHSNDSDLVYPTNIKHLANL* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 17448716 17452527 - Vvi18g1291 Vvi18g1291 780994

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1291 328 Gene3D SGNH hydrolase 1 314 IPR036514 -
Vvi18g1291 328 PANTHER OS06G0560700 PROTEIN 1 327 - -
Vvi18g1291 328 SUPERFAMILY SGNH hydrolase 126 308 - -
Vvi18g1291 328 Pfam GDSL-like Lipase/Acylhydrolase 2 307 IPR001087 GO:0016788
Vvi18g1291 328 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 1 327 - -
Vvi18g1291 328 CDD SGNH_plant_lipase_like 1 312 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1291 - - - vvi:100249332 651.744
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1291 Blo01g01753 Blo12g00766 . Bda03g00416 . Bpe04g00382 Bma04g00393 Bma01g02536 . . Cma01g00940 Cma09g01164 . . . Cpe06g00922 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00848 . . . . . Sed10g1778 Cmo01g00980 Cmo09g01166 . . . Car09g01041 . . Bhi09g01567 Tan01g2976 Cmetu01g1498 . . . . Cla09g00962 Cam09g1014 Cec09g1017 Cco09g1029 . . Cre09g0977 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007522 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 36