Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1298 ATGGTATGCACCCTCTTAGAAGGTATAAGGTCTCTGAAAGGAAGAAATAGAGTAATGAATAATATGCATAAAGCTTCTGGTCATAGCAACTTCTTTTGCTGCACTTTATGCACAACGATACTACAAAATGCAGACCCCTTAAGAAATGATGGTTTTGACTTATTTTTTTGGTCATTTTCTCTTTTGGGGTGTTCAGTTCTTAGTGTCATATTCTGTGAGGTTGTTGCTATATATGGAGTTATTGTGGCAATCATTCTTCAAACAAAGCTAGAGAGTGTGCCTGCATCCAATATTTATGCACCAGAGTCCCTTAGAGTCGGATATGCAATCTTTGCCTCTGGAATTATTATGGGTTTTGCCAACCTTGTCTGTGGGTCGTTGGTTCAAATGATCTTTCTATATGTCGGTTCATGCAGAAGGAGATGGACCACAACAATCAATGAGCAACTGGAAGGGAGTTTTTAG 465 38.92 MVCTLLEGIRSLKGRNRVMNNMHKASGHSNFFCCTLCTTILQNADPLRNDGFDLFFWSFSLLGCSVLSVIFCEVVAIYGVIVAIILQTKLESVPASNIYAPESLRVGYAIFASGIIMGFANLVCGSLVQMIFLYVGSCRRRWTTTINEQLEGSF* 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 17738304 17740132 - Vvi18g1298 Vvi18g1298 781001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1298 154 PRINTS Vacuolar ATP synthase 16kDa subunit signature 1 14 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi18g1298 154 PRINTS Vacuolar ATP synthase 16kDa subunit signature 65 88 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi18g1298 154 PANTHER V-TYPE PROTON ATPASE SUBUNIT C''1-RELATED 64 154 - -
Vvi18g1298 154 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 64 154 - -
Vvi18g1298 154 Pfam ATP synthase subunit C 60 86 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vvi18g1298 154 Gene3D - 55 139 IPR035921 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1298 K03661 ATPeV0B, ATP6F; V-type H+-transporting ATPase 21kDa proteolipid subunit - vvi:100253217 110.923
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1298 Blo01g01371 Blo12g01087 Bda01g00869 Bda03g00060 Bpe02g00579 Bpe04g00047 Bma04g00059 Bma01g02155 . Cmo12g00266 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031775 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1