Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1304 ATGGCAACTCAAGCAGATGGAATTGATAGATCCAACACACTAATAGAAAACAGCCTTAAGAATAATGGACACATGGGAAGAGATGTGGAAATCAGCGGAACTAATGATGGTCAAGAAGGAAGAGATACTGGTGTTTTTAAAACTAATGGATTCTCCAAAGTAGGAACTGATATTTCTTATGATAATGAGAAGGATGCCATAATTTGGGAACCCCCGGAACCAGAGGATGACATGGAGTGTAGCATGGCTAATAGTGATGACGACGATGAGTTTGGTGATGGTACGAAATGGGGAGAGCCAAGTTCCTTGTGTAGCTTTGGAGAAGAAGGCAGCGGGAGCTACAAGTTTAGGGATGAAAAACAAAAGGCAATGGAAGAGGTTATAAATGGGAAGTTCAAGACTCTCGTGAATCAACTTCTTAAATCTGTGGGTGTTGCCTCTTCAGGGAAAGATGGTGAAAGCTGGGTGGATATAGTTACTTCTTTATCATGGGAAGCTGCTTCATTTGTGAAACCTGATGCCATTGAGGGTAAAGCAATGGATCCAGATGGCTATGTGAAGGTGAAATGCATTGCAGCTGGTTCTCGCAACCAAAGTCAAGTAATTAAAGGACTGGTCTTTAAAAAGCATGCTGCTCATAAGCACATGCAGACAAGGTACAAGAACCCTCGACTGTTGTTGATTCAGGGCATGCTTGGTCATTCTTCAAGTGGGTTATCATCATTTAATTCAATGGATCAGGAGAAGGGTAATCTGAATTCTGTTCGTGAGATGATAGATGTGTGTCGCCCGAATGTAGTTTTAGTGGAGAAAACTGTTTCTCGTGATGTGCAAGAGACTTTTCTTGAAAAAGGACTGAAACATTGTGATTCCTTTCATTTTGAAAAATTTGTGGAGGAACATGCTAGTGTGGGTGAAGGTGGAAAAAAGCCAAGTAAGACCTTGATGTTCATTGAGGGCTGTCCTACACGGCAAGGTTGTACGATTTTACTGAAAGGAACTCACAGTGAGGAATTGAAGAGGGTTAAATGTGTTATGCAGTGTGCAGTTGTTATGGCATATCATTTAATTTTAGAGACTTCTTTCCTTGTTGATCAAAAAGCAATGATCTCTACTATTCCTTTTGATGGGTTAGCAAATCTAGCGCCAACTAATCCACAATTCCCTGTTGTTGGCTCTGGTAATTCAAGTGCCTCTTGTCTTGAGGAGCCTATTGCCAAAGATGATGCATTACGCTTGATTGTTCTTTCGGGGTTATCGTCTCTTTCAGCCTCCATAAAGAAAGTTATAGGGGACAATTTCCCTATTATCATGACGTCAGTTCCAGTTTTGAAATCTCCAGAGGCATTTGAAAATTGTGATATGGAAGCAAAAAGTGGTTCTGATGAAGAGAAGTCACATGATAGCAAAAGACCACTGTCACCCTTGGCTTGCTCTGATGTTCCTTTGAATGACGTAAAATCTGGTGGCAAAAATGAAGACCAAATGCAAAGTAAGGATGACATTAGCACAGTTTTGGACTCCCAGAGCATTTTGGTTCTGATGTCAAGTCGGAATGCATCAAAAGGGAGGATCTGTGAGCAAAGCCATTTTTCTCATATCAAGTTCTACAGGAACTTTGATGTTCCCCTTGGGAAATTTTTGCAAGATAATTTACTCAATCAGAAGCATCAATGCCCCACATGTGGTGAACTGCCAGAAGCTCATTTTTACTACTATGCACATTGCAATAAGCAGCTTACCATACAAGTTAAACAACTTCCCACCAAGTCATGTTTGCCTGGGGAAGCAGAAGGAAAACTTTGGATGTGGAGTCGCTGCGGTAAATGTAAACCTGAGAATGGAATCACACAATGTACAAAAAGAGTGTTGATATCCACTGCTGCTCGTGGCTTGTCCTTTGGAAAGTTTTTGGAGCTCAGTTTTTCACAGCTGTCTTCACCCAGTAGGGTATCAAGCTGTGGGCATTTTTTTCACAGGGACTTCCTCTACTTTTTTGGGTTAGGTCCCATGGTTGCAGTGCTCAGATATTCTCCTGTCTCAACTTATGCTGTAGATGTACCTCCTCATAAGCTGGAATTCAGTAATTCAATTAGACAAGAATCTCTCAAGAAGGAAATGGAGAATGTCTACATGAAAGCGATATCACTGTTCACAGAGGTTGCTAATGCTTTGAAGAAGATAGCATCTCGGTTTGCAGGCTCCACTCTGAATCTTGGTGGTTCATTGAAAGAATTTTCTGATGTTGAAGAGATGTTAAGCCAGGAGAGATATGAATTTGAGGTCAACATTCAAAAAGCTATTGTTAGGAATGGGAAGCCAGAGCAGGCCATTTATAAACTTCTCAGCTTGAACAGATTACTCTGGGAGCTTCAACTTGAATCATGCTTATGGGATAGGCGTTTGCATGCACTACTCTCGCCTGATTCTTCAGTGGTTGGCACTAGTTTCTATAATAGTGGCAATGTGAAAACAAAGTTGGAGACAAGAGATCAGGGAAATGAGTTGTCAATCAGGGAAATCCCTGTTGAGGATGCATCTCAAAGGAGTTCATCTCATCCATTGGCATGCAACTTGGAGAAGGCAAAAGGATGGATCTGGTCTCCATTTCCAGAAATTAGGAGGGATTGCATGAAGGATCTCCAGGGAGGTTACTTGCCCAAATTTGAATCTATTAGTAGCTACACACCAGAATATTTACCCTCAGCTTATCAACTGATCATTGAGGAGGGCTCAAGGCTGCATATCCCTCTTGGTACTGATGATTATATTGTCTCAGACTATGAGGGTGAACTTTCAAGCATAATCTCTTGTGCCCTGGCCTTCCTGAATCGAATTACGTCAATGCCTTCATCTCATTGGCATTCAAATGGTTCTGTGGATTCAGATGGAAGTGTTTCTTCTGAGGAGTCTCTCTTCTCCAGTTTTGATGGATTTAATTTGTTGGATTCTCTGGTTTCTTATGGTGCCATTCATCCTGAGGTCTCTCTTGGAGTTGCAAAATCACCTGGAAAGGGTAAATATTCAGTGGTTTGTTTATATGCCAACCAGTTCCGCAATCTTCGAGATCAGTGCTGTCCATCTGAGCTTGATTACATCGCCTCCCTCAGCCGATGTAGGAACTGGGATGCCAAAGGTGGGAAAAGTAAATCTTTCTTTGCTAAAACACTGGATGACAGGTTTATCATAAAGGAAATTAAGAAGACAGAATTCGAATCCTTTATGAAGTTTGCTCCTGATTATTTTGCTTACATGAATCACTCCTTCACATCGGGGAGCCAAACTTGCCTTGCCAAAATTCTTGGGATTTATCAGGTAATTATTAGACAGACAAAGAGTGGGAAAGAGATGAGACATGATCTGATGGTGATGGAGAATCTTACTTTCTGTAGAAGCATTACTCGCCAGTATGATCTCAAAGGTGCTTTACATGCTCGATACAATTCAGCTGCTGATGGTCCAGAAGATGTTCTCTTGGACCAGAACTTTGTTAATGACATGAACACCTCTCCTGTGTACGTTAGTAGGAAAGCGAAGCGTGTCTTGCAGCGGGCAGTTTGGAATGACACAACTTTCCTCAATTCAATTAATGTCATGGATTATTCTCTACTGGTGGGAGTGGATACTCAGCGGCATGAGCTTGTTTGTGGCATTATTGATTATCTCAGGCAGTACACATGGGACAAGCAACTTGAGACATGGGTCAAGTCTTCCCTTGTTGTCCCTAAGAATGTTTTGCCAACCGTCATCTCTCCAAAAGAGTACAAAAAGAGATTCAGGAAGTTCATGTCTACATACTTTTTTAGTGTCCCAGATCACTGGTGCTCACAAAGGTCTTCCAATCCTTGTGAACTTTGTGGCATCAGAGAGGACGAGTCTTCTTCTCAATTGAAAGCCCAGAAGCAGGGGGAGCAAAATGGTTTTTCAGCTTGA 3933 41.72 MATQADGIDRSNTLIENSLKNNGHMGRDVEISGTNDGQEGRDTGVFKTNGFSKVGTDISYDNEKDAIIWEPPEPEDDMECSMANSDDDDEFGDGTKWGEPSSLCSFGEEGSGSYKFRDEKQKAMEEVINGKFKTLVNQLLKSVGVASSGKDGESWVDIVTSLSWEAASFVKPDAIEGKAMDPDGYVKVKCIAAGSRNQSQVIKGLVFKKHAAHKHMQTRYKNPRLLLIQGMLGHSSSGLSSFNSMDQEKGNLNSVREMIDVCRPNVVLVEKTVSRDVQETFLEKGLKHCDSFHFEKFVEEHASVGEGGKKPSKTLMFIEGCPTRQGCTILLKGTHSEELKRVKCVMQCAVVMAYHLILETSFLVDQKAMISTIPFDGLANLAPTNPQFPVVGSGNSSASCLEEPIAKDDALRLIVLSGLSSLSASIKKVIGDNFPIIMTSVPVLKSPEAFENCDMEAKSGSDEEKSHDSKRPLSPLACSDVPLNDVKSGGKNEDQMQSKDDISTVLDSQSILVLMSSRNASKGRICEQSHFSHIKFYRNFDVPLGKFLQDNLLNQKHQCPTCGELPEAHFYYYAHCNKQLTIQVKQLPTKSCLPGEAEGKLWMWSRCGKCKPENGITQCTKRVLISTAARGLSFGKFLELSFSQLSSPSRVSSCGHFFHRDFLYFFGLGPMVAVLRYSPVSTYAVDVPPHKLEFSNSIRQESLKKEMENVYMKAISLFTEVANALKKIASRFAGSTLNLGGSLKEFSDVEEMLSQERYEFEVNIQKAIVRNGKPEQAIYKLLSLNRLLWELQLESCLWDRRLHALLSPDSSVVGTSFYNSGNVKTKLETRDQGNELSIREIPVEDASQRSSSHPLACNLEKAKGWIWSPFPEIRRDCMKDLQGGYLPKFESISSYTPEYLPSAYQLIIEEGSRLHIPLGTDDYIVSDYEGELSSIISCALAFLNRITSMPSSHWHSNGSVDSDGSVSSEESLFSSFDGFNLLDSLVSYGAIHPEVSLGVAKSPGKGKYSVVCLYANQFRNLRDQCCPSELDYIASLSRCRNWDAKGGKSKSFFAKTLDDRFIIKEIKKTEFESFMKFAPDYFAYMNHSFTSGSQTCLAKILGIYQVIIRQTKSGKEMRHDLMVMENLTFCRSITRQYDLKGALHARYNSAADGPEDVLLDQNFVNDMNTSPVYVSRKAKRVLQRAVWNDTTFLNSINVMDYSLLVGVDTQRHELVCGIIDYLRQYTWDKQLETWVKSSLVVPKNVLPTVISPKEYKKRFRKFMSTYFFSVPDHWCSQRSSNPCELCGIREDESSSQLKAQKQGEQNGFSA* 1311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 18029531 18043172 - Vvi18g1304 Vvi18g1304 781007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1304 1310 SMART PIPK_2 979 1268 IPR002498 GO:0016307|GO:0046488
Vvi18g1304 1310 MobiDBLite consensus disorder prediction 1 20 - -
Vvi18g1304 1310 Pfam TCP-1/cpn60 chaperonin family 135 287 IPR002423 GO:0005524
Vvi18g1304 1310 Gene3D - 1128 1268 - -
Vvi18g1304 1310 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1212 1265 IPR002498 GO:0016307|GO:0046488
Vvi18g1304 1310 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1045 1210 IPR002498 GO:0016307|GO:0046488
Vvi18g1304 1310 MobiDBLite consensus disorder prediction 1 48 - -
Vvi18g1304 1310 SUPERFAMILY SAICAR synthase-like 980 1268 - -
Vvi18g1304 1310 SUPERFAMILY GroEL apical domain-like 198 333 IPR027409 -
Vvi18g1304 1310 MobiDBLite consensus disorder prediction 455 500 - -
Vvi18g1304 1310 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 61 286 - -
Vvi18g1304 1310 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 284 1295 - -
Vvi18g1304 1310 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 950 1267 IPR002498 GO:0016307|GO:0046488
Vvi18g1304 1310 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 991 1126 IPR027484 -
Vvi18g1304 1310 Gene3D GroEL 197 287 IPR027409 -
Vvi18g1304 1310 CDD PIPKc_PIKfyve 1007 1267 IPR044769 GO:0000285
Vvi18g1304 1310 MobiDBLite consensus disorder prediction 455 471 - -
Vvi18g1304 1310 PANTHER 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1D-RELATED 284 1295 - -
Vvi18g1304 1310 PANTHER 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1D-RELATED 61 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1304 K00921 PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150] - vvi:100242669 1624.37
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1304 Blo01g01752 . . Bda03g00414 Bpe02g00190 Bpe04g00380 Bma04g00391 Bma01g02535 . . . Cma09g01172 . . . Cpe06g00918 . . . . . . . . . . . . . . . . . . Cone20ag0680 . . . . . . Bda11g00850 . . . . . . . Cmo09g01170 . . . Car09g01046 . . Bhi09g01620 . . . . . . Cla09g00997 Cam09g1055 Cec09g1057 Cco09g1071 . . Cre09g1019 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004019 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 0 0 7 3 1 43