Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1306 ATGAACGACCCAGCCCACCATGACGAAGATGAGGATCAAGGGGATGTGTTTATCGATGAAAACGACGTTGTTCAGGAAATCACTGTAGACGACGAAGATCTTCCTGACGTAGAAGGCGAAGATGATGATGCAGAAGATTTTGAGGAAGCTGATGATTCCATGCACATTTTCACTGGTCATACTGGTGAACTTTACACAGTTGCATGCAGCCCAATGGATGCAAGATTAGTGGCAACAGGGGGTGGAGATGATAAAGGATTTATTTGGAAGATTTTTGATGGAGACTGGGCTTTTGAACTTGGAGGTCACAAAGATTCTGTGTGTAGTTTAGACTTTAGTGCTGATGGACAGCTGCTTGCATCTGGAAGCTTTGATGGGTTTGTTAAAATCTGGGATGCATCTTCTGGAGACCTCAAGGGCACACTTGAAGGTCCTGGTGGAGGCATTGAGTGGGTCAGGTGGCATCCAAGAGGACATTTGGTCTTGGCTGGTTCAGAGGATTGCACAGTTTGGATGTGGAATGCTGACAGAAGTGCCTACCTTAACATGTTTTCAGGTCATGCTAGTAGTGTGACATGTGGCAATTTTACTCCTGATGGCAAAACAATCTGTACTGGTTCTGATGATGCAACCTTAAGAATATGGAATCCAAGAAGTGGTGAAAATACCCATGTTGTTAGAGGTCATCCATATCATACTGAGGGACTGACATGCTTGGCAATAACCTCTGATTCAACTCTTGCTCTTACTGGCTCAAAGGATAGTTCTGTCCACATTGTGAACATCGCAACTGGCAAGGTTGTTAGTTCATTGACTTCTCACACAGATTCAATTGAATGTATTGGCCTTTCACTGAGTTCCCCATGGGCTGCAACCGGCGGCATGGATAATAAGCTCGTTGTCTGGGATCTGCAGCATTCATCACCACGCTGCACATGTGACAATGAGGATGGGGTGACATGCTTGTCATGGCTAGGTGATTCTAAGTACGTAGCTGCTGGGTGTGTGGATGGGAAAATTCGAATCTGGGATAGCCTCTCTGGAGATTGTGTGAGAACTTTCAGTGGGCATTCCGATGCCATTCAGTCTCTGGGTGTATCTGCTGATAAGAATTTCCTGGTTTCTGGTTCCCTGGATGGTACTGCCCGGGTATTTGAGATCCCAGAGTTCCAGTGA 1176 45.83 MNDPAHHDEDEDQGDVFIDENDVVQEITVDDEDLPDVEGEDDDAEDFEEADDSMHIFTGHTGELYTVACSPMDARLVATGGGDDKGFIWKIFDGDWAFELGGHKDSVCSLDFSADGQLLASGSFDGFVKIWDASSGDLKGTLEGPGGGIEWVRWHPRGHLVLAGSEDCTVWMWNADRSAYLNMFSGHASSVTCGNFTPDGKTICTGSDDATLRIWNPRSGENTHVVRGHPYHTEGLTCLAITSDSTLALTGSKDSSVHIVNIATGKVVSSLTSHTDSIECIGLSLSSPWAATGGMDNKLVVWDLQHSSPRCTCDNEDGVTCLSWLGDSKYVAAGCVDGKIRIWDSLSGDCVRTFSGHSDAIQSLGVSADKNFLVSGSLDGTARVFEIPEFQ* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 18136887 18146114 - Vvi18g1306 Vvi18g1306 781009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 353 IPR001680 GO:0005515
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 305 - -
Vvi18g1306 391 ProSitePatterns Trp-Asp (WD) repeats signature. 290 304 IPR019775 -
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 91 IPR001680 GO:0005515
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 391 IPR001680 GO:0005515
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Vvi18g1306 391 SUPERFAMILY WD40 repeat-like 56 388 IPR036322 GO:0005515
Vvi18g1306 391 ProSitePatterns Trp-Asp (WD) repeats signature. 119 133 IPR019775 -
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 344 - -
Vvi18g1306 391 Pfam WD domain, G-beta repeat 99 132 IPR001680 GO:0005515
Vvi18g1306 391 Pfam WD domain, G-beta repeat 348 385 IPR001680 GO:0005515
Vvi18g1306 391 Pfam WD domain, G-beta repeat 182 216 IPR001680 GO:0005515
Vvi18g1306 391 Pfam WD domain, G-beta repeat 266 303 IPR001680 GO:0005515
Vvi18g1306 391 Pfam WD domain, G-beta repeat 138 174 IPR001680 GO:0005515
Vvi18g1306 391 Pfam WD domain, G-beta repeat 317 344 IPR001680 GO:0005515
Vvi18g1306 391 Pfam WD domain, G-beta repeat 220 259 IPR001680 GO:0005515
Vvi18g1306 391 CDD WD40 98 386 - -
Vvi18g1306 391 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 3 390 - -
Vvi18g1306 391 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 3 390 - -
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 221 - -
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 100 141 IPR001680 GO:0005515
Vvi18g1306 391 SMART WD40_4 177 216 IPR001680 GO:0005515
Vvi18g1306 391 SMART WD40_4 264 303 IPR001680 GO:0005515
Vvi18g1306 391 SMART WD40_4 135 174 IPR001680 GO:0005515
Vvi18g1306 391 SMART WD40_4 219 261 IPR001680 GO:0005515
Vvi18g1306 391 SMART WD40_4 93 132 IPR001680 GO:0005515
Vvi18g1306 391 SMART WD40_4 50 90 IPR001680 GO:0005515
Vvi18g1306 391 SMART WD40_4 347 386 IPR001680 GO:0005515
Vvi18g1306 391 SMART WD40_4 306 344 IPR001680 GO:0005515
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 312 IPR001680 GO:0005515
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 391 - -
Vvi18g1306 391 Gene3D - 50 389 IPR015943 GO:0005515
Vvi18g1306 391 PRINTS G protein beta WD-40 repeat signature 119 133 IPR020472 -
Vvi18g1306 391 PRINTS G protein beta WD-40 repeat signature 203 217 IPR020472 -
Vvi18g1306 391 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Vvi18g1306 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 100 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1306 K24725 AAMP; angio-associated migratory cell protein - vvi:100256222 803.897
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1306 . . . . . . . . . . . Cma09g01283 . . . . . . . . . . . . Cla08g00264 Cam08g0704 . Cco08g0349 Clacu08g0411 . Cre08g0236 . . . . . . . . . . . Bda13g01432 . . . . . . Cmo09g01240 . . . Car09g01096 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004733 3 1 1 2 1 1 2 2 0 1 1 1 2 1 1 3 1 1 2 1 1 2 1 1 1 1 1 3 1 2 42