Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1309 ATGTCGATGCTCGATTCCTTCTTCAACAAGGGCTTCAAAGGTTCGAAATGTAAAACCCTACTGAAACTTACAATCCCTCGCATAAAGTTGTTAAGGAACAGGAGAGAGATTCAGATAAAGCAAATGCGCCGAGACATTGCTAAGCTTCTTGAGACTGGTCAAGAAGCTACTGCTCGAATCCGGGTGGAGCATATAATAAGAGAAGAGAATATGATGGCTGCTCAAGAGATCATTGAGCTGTACTGTGAGCTTATTTCTGTTCGCCTCCCAATCATTGAAACACAAAGGGAATGTCCCTTAGACCTGAAGGAAGCAATATCGAGTTTGTGTTTTGCTGCACCGAGATGTGCAGATCTACCAGAGCTGCTGCAGGTTCAAATGCTAATGGCCTCCAAATATGGGAAGGAATTTGTAGCGGCTGCAACTGAGCTCATGCCAGATTGTGGTGTTTGTCGCCAGTTGATTGAACTGCTTTCTGTCCGTGCTCCTTCTCCTGATGTGAAACTGAAGCTACTCAAGGAAATTGCTGAAGAGCATGGGCTAGATTGGGATCCAGCTGCCTCTGAAACTGAGTTTTTCAAGCCACATGAAGACTTGCTGAATGGCCCAACACAGTTTGTCAGTGGATCTAAATTGCCTCTTCCCAAGGAGAAACATGATGAATCATTGCACTCTGCCAGTGAACAAACACCCAAGGAAGAGGATTCTGATTCTGATGCTGGCTTCTTCGACCCATTAGATTTTCCTGAAGTTCCCAAGGCAACATTACAGCCAAGAGTGGATGCCGTCTCCCCCCCTGCAATGTTCCCACCTTCTCCATCTGCTCCTCACCATCAAGTTAATTATGAAGCACTGAGACATTCTGAAGTTAATGAAAACCTATTACGTCAACCACATCCACAACCTCAGGAAGCAGCGGAAGAAAGAACAGTGGCTGACCGAAATGAATCGCCTGATGTTTCAGTCAAAGCTATGGAAGATAAACAGTTTGTGCCATTCATTTCTCGCCCGATATTGGCTTCTGCATCATTTTCAGCAAGGCAAAATAATCCACCTCCACCTCCCAATCTCTCAAGAACCAAAACTGAGGCCGATATTGATTTGCAGGATGTATTGGCTGCTGCTCAGCAGCTAGCCTTGCACAGGTCAGAATTGCTGAAATCATGA 1167 45.33 MSMLDSFFNKGFKGSKCKTLLKLTIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEIIELYCELISVRLPIIETQRECPLDLKEAISSLCFAAPRCADLPELLQVQMLMASKYGKEFVAAATELMPDCGVCRQLIELLSVRAPSPDVKLKLLKEIAEEHGLDWDPAASETEFFKPHEDLLNGPTQFVSGSKLPLPKEKHDESLHSASEQTPKEEDSDSDAGFFDPLDFPEVPKATLQPRVDAVSPPAMFPPSPSAPHHQVNYEALRHSEVNENLLRQPHPQPQEAAEERTVADRNESPDVSVKAMEDKQFVPFISRPILASASFSARQNNPPPPPNLSRTKTEADIDLQDVLAAAQQLALHRSELLKS* 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 18227133 18232345 + Vvi18g1309 Vvi18g1309 781012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1309 388 MobiDBLite consensus disorder prediction 213 239 - -
Vvi18g1309 388 MobiDBLite consensus disorder prediction 344 364 - -
Vvi18g1309 388 Coils Coil 32 59 - -
Vvi18g1309 388 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031
Vvi18g1309 388 Gene3D - 5 192 IPR042277 -
Vvi18g1309 388 MobiDBLite consensus disorder prediction 204 241 - -
Vvi18g1309 388 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 1 379 - -
Vvi18g1309 388 MobiDBLite consensus disorder prediction 302 317 - -
Vvi18g1309 388 PANTHER IST1 FAMILY MEMBER 1 379 IPR005061 GO:0015031
Vvi18g1309 388 MobiDBLite consensus disorder prediction 296 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1309 - - - vvi:100245921 728.783
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38