Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1311 ATGGAGGGGGAGGTGGTCGTGCTGTTCACTCTGCTTCTGCTCTGCTTGCTTCATCCATTCTCTTTCATCTCTGCTAACATGGAAGGTGATGCTTTGCATACACTGAGGACCAACTTGGAGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTTGATCTTGGAAATGCTGCTTTGTCGGGTCAACTGGTACCACAGCTTGGCCTCCTTAAGAATTTGCAGTACTTGGAGCTCTACAGTAATAACATAAGTGGACCAATTCCTAGTGACCTTGGGAATCTAACTAGCTTGGTGAGCTTGGATCTTTATTTGAACAGTTTTACTGGTCCCATCCCGGAGACATTGGGCAAGCTATCAAAGTTGCGCTTCCTCCGGCTTAACAACAACAGCCTGACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATTGGATCTATCAAACAACCGCCTCTCAGGAGTGGTTCCAGACAATGGCTCTTTTTCATTATTTACCCCCATCAGTTTTGCTAATAACCTGGATTTATGTGGCCCGGTTACTGGGCACCCATGCCCTGGATCTCCCCCATTTTCTCCACCTCCCCCATTTGTCCCACCACCACCAATTTCTTCACAAGGAGGGAACAGTGCCACAGGAGCAATTGCTGGGGGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGCTGAAGAGGACCCAGAGGTTCATCTGGGGCAGCTTAAAAGGTTTTCACTGCGAGAATTACAAGTTGCAACAGATAGTTTTAGCAACAAGAACATTCTGGGTAGAGGTGGATTTGGTAAGGTGTACAAAGGACGCTTAGCGGATGGTTCTCTTGTGGCTGTGAAAAGATTGAAAGAAGAGCGTACACCAGGTGGTGAGCTGCAGTTTCAAACAGAGGTAGAGATGATAAGCATGGCTGTGCATCGGAATCTCCTCCGTCTTCGTGGTTTTTGCATGACACCTACTGAACGGCTGCTTGTTTATCCGTATATGGCTAATGGAAGCGTTGCATCATGTTTAAGAGAACGCCCGGCATCTGAACCACCACTTGATTGGCCAACAAGGAAGCGAATTGCGTTGGGATCTGCAAGAGGGCTTTCTTATTTGCATGATCATTGTGACCCAAAGATTATTCACCGTGATGTGAAAGCTGCAAATATTTTGTTGGATGAGGAATTTGAGGCTGTTGTTGGAGACTTTGGGTTAGCTAAGCTTATGGATTACAAGGATACCCATGTTACCACTGCTGTCCGTGGCACAATAGGACATATAGCTCCAGAGTACCTCTCTACTGGAAAGTCTTCAGAAAAAACTGATGTTTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTAAAAGGACTTCTGAAAGAGAAGAAGTTAGAAATGCTGGTTGATCCTGATCTTAAGAACAATTATGTAGAAGCAGAAGTAGAGCAGCTAATCCAGGTTGCCCTGCTGTGCACGCAAGGCTCTCCAATGGACCGGCCCAAGATGTCAGAAGTGGTGAGAATGCTGGAAGGTGATGGATTGGCAGAGAGGTGGGACGAGTGGCAGAAAGTGGAAGTTCTCCGCCAGGAGGTGGAACTCGCTCCTCACTCCAACTCTGATTGGATTGTGGACTCAACAGACAATCTACATGCGGTTGAATTATCGGGTCCAAGGTGA 1875 46.67 MEGEVVVLFTLLLLCLLHPFSFISANMEGDALHTLRTNLEDPNNVLQSWDPTLVNPCTWFHVTCNSDNSVIRVDLGNAALSGQLVPQLGLLKNLQYLELYSNNISGPIPSDLGNLTSLVSLDLYLNSFTGPIPETLGKLSKLRFLRLNNNSLTGTIPMSLTNITALQVLDLSNNRLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISSQGGNSATGAIAGGVAAGAALLFAAPAIGFAWWRRRKPQEYFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPASEPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHSNSDWIVDSTDNLHAVELSGPR* 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 18289692 18300956 + Vvi18g1311 Vvi18g1311 781014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1311 624 Pfam Protein kinase domain 302 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1311 624 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Vvi18g1311 624 SMART serkin_6 301 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1311 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Vvi18g1311 624 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Vvi18g1311 624 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Vvi18g1311 624 SUPERFAMILY Protein kinase-like (PK-like) 280 576 IPR011009 -
Vvi18g1311 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Vvi18g1311 624 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1311 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 624 - -
Vvi18g1311 624 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 13 624 IPR031048 GO:0004675|GO:0005102|GO:0006468
Vvi18g1311 624 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Vvi18g1311 624 SUPERFAMILY L domain-like 29 190 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1136 Vvi18g1311 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76348 PF00069 Pkinase 3.10E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1311 K13418 - vvi:100247683 1162.13