Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g1311 | ATGGAGGGGGAGGTGGTCGTGCTGTTCACTCTGCTTCTGCTCTGCTTGCTTCATCCATTCTCTTTCATCTCTGCTAACATGGAAGGTGATGCTTTGCATACACTGAGGACCAACTTGGAGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTTGATCTTGGAAATGCTGCTTTGTCGGGTCAACTGGTACCACAGCTTGGCCTCCTTAAGAATTTGCAGTACTTGGAGCTCTACAGTAATAACATAAGTGGACCAATTCCTAGTGACCTTGGGAATCTAACTAGCTTGGTGAGCTTGGATCTTTATTTGAACAGTTTTACTGGTCCCATCCCGGAGACATTGGGCAAGCTATCAAAGTTGCGCTTCCTCCGGCTTAACAACAACAGCCTGACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATTGGATCTATCAAACAACCGCCTCTCAGGAGTGGTTCCAGACAATGGCTCTTTTTCATTATTTACCCCCATCAGTTTTGCTAATAACCTGGATTTATGTGGCCCGGTTACTGGGCACCCATGCCCTGGATCTCCCCCATTTTCTCCACCTCCCCCATTTGTCCCACCACCACCAATTTCTTCACAAGGAGGGAACAGTGCCACAGGAGCAATTGCTGGGGGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGCTGAAGAGGACCCAGAGGTTCATCTGGGGCAGCTTAAAAGGTTTTCACTGCGAGAATTACAAGTTGCAACAGATAGTTTTAGCAACAAGAACATTCTGGGTAGAGGTGGATTTGGTAAGGTGTACAAAGGACGCTTAGCGGATGGTTCTCTTGTGGCTGTGAAAAGATTGAAAGAAGAGCGTACACCAGGTGGTGAGCTGCAGTTTCAAACAGAGGTAGAGATGATAAGCATGGCTGTGCATCGGAATCTCCTCCGTCTTCGTGGTTTTTGCATGACACCTACTGAACGGCTGCTTGTTTATCCGTATATGGCTAATGGAAGCGTTGCATCATGTTTAAGAGAACGCCCGGCATCTGAACCACCACTTGATTGGCCAACAAGGAAGCGAATTGCGTTGGGATCTGCAAGAGGGCTTTCTTATTTGCATGATCATTGTGACCCAAAGATTATTCACCGTGATGTGAAAGCTGCAAATATTTTGTTGGATGAGGAATTTGAGGCTGTTGTTGGAGACTTTGGGTTAGCTAAGCTTATGGATTACAAGGATACCCATGTTACCACTGCTGTCCGTGGCACAATAGGACATATAGCTCCAGAGTACCTCTCTACTGGAAAGTCTTCAGAAAAAACTGATGTTTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTAAAAGGACTTCTGAAAGAGAAGAAGTTAGAAATGCTGGTTGATCCTGATCTTAAGAACAATTATGTAGAAGCAGAAGTAGAGCAGCTAATCCAGGTTGCCCTGCTGTGCACGCAAGGCTCTCCAATGGACCGGCCCAAGATGTCAGAAGTGGTGAGAATGCTGGAAGGTGATGGATTGGCAGAGAGGTGGGACGAGTGGCAGAAAGTGGAAGTTCTCCGCCAGGAGGTGGAACTCGCTCCTCACTCCAACTCTGATTGGATTGTGGACTCAACAGACAATCTACATGCGGTTGAATTATCGGGTCCAAGGTGA | 1875 | 46.67 | MEGEVVVLFTLLLLCLLHPFSFISANMEGDALHTLRTNLEDPNNVLQSWDPTLVNPCTWFHVTCNSDNSVIRVDLGNAALSGQLVPQLGLLKNLQYLELYSNNISGPIPSDLGNLTSLVSLDLYLNSFTGPIPETLGKLSKLRFLRLNNNSLTGTIPMSLTNITALQVLDLSNNRLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISSQGGNSATGAIAGGVAAGAALLFAAPAIGFAWWRRRKPQEYFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPASEPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHSNSDWIVDSTDNLHAVELSGPR* | 625 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 18289692 | 18300956 | + | Vvi18g1311 | Vvi18g1311 | 781014 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g1311 | 624 | Pfam | Protein kinase domain | 302 | 573 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi18g1311 | 624 | Gene3D | Phosphorylase Kinase; domain 1 | 270 | 377 | - | - | |
Vvi18g1311 | 624 | SMART | serkin_6 | 301 | 575 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi18g1311 | 624 | ProSitePatterns | Protein kinases ATP-binding region signature. | 307 | 329 | IPR017441 | GO:0005524 | |
Vvi18g1311 | 624 | Pfam | Leucine rich repeat N-terminal domain | 25 | 65 | IPR013210 | - | |
Vvi18g1311 | 624 | Gene3D | Ribonuclease Inhibitor | 24 | 211 | IPR032675 | - | |
Vvi18g1311 | 624 | SUPERFAMILY | Protein kinase-like (PK-like) | 280 | 576 | IPR011009 | - | |
Vvi18g1311 | 624 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 424 | 436 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi18g1311 | 624 | ProSiteProfiles | Protein kinase domain profile. | 301 | 588 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi18g1311 | 624 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 13 | 624 | - | - | |
Vvi18g1311 | 624 | PANTHER | LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED | 13 | 624 | IPR031048 | GO:0004675|GO:0005102|GO:0006468 | |
Vvi18g1311 | 624 | Gene3D | Transferase(Phosphotransferase) domain 1 | 378 | 595 | - | - | |
Vvi18g1311 | 624 | SUPERFAMILY | L domain-like | 29 | 190 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi7g1136 | Vvi18g1311 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76348 | PF00069 | Pkinase | 3.10E-44 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g1311 | K13418 | - | vvi:100247683 | 1162.13 |