Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1318 ATGGCTAGTTCATGTGAAAGATGGATCGATGGTCTCCAATTCTCCTCATTGTTCTGGCCCCCCCCGCAAGATGTGCAGCAACGGAAGGCTCAAATTACTGCCTATGTTGACTACTTCGGTCAGTTCACATCAGAACAATTCCCTGAAGATATTGCTGAGTTGATTCGGAGCCGTTATCCGTCAAAGGAACAGCGCCTTTTTGATGATGTCTTGGCAACGTTTGTTCTTCATCATCCGGAACATGGGCATGCTGTCGTTCTTCCAATTATTTCGTGTATCATTGATGGTACACTGGTGTATGATAGGTGTACTCCTCCTTTTGCCTCTTTCATTTCCTTGGTCTGCCCAAGCAGCGAGAATGAGTATTCTGAACAATGGGCTCTGGCATGTGGGGAGATTTTGCGAATTTTAACTCATTACAATCGCCCAATTTACAAGGTGGAACATCAGAGCAGTGAAGCAGATAGAAGCAGCAGTGGCAGGCATGCTACAACAAGTGACTCTGTAGATGGGAAATCCTCTCAAGGACCGTTACTACAAAATGAGAGGAAACCTTCAAGGCCTTTGTCTCCCTGGATTACTGATATATTGCTTGCTGCACCTCTGGGTATCAGAAGTGACTACTTTCGTTGGTGCGGCGGTGTTATGGGGAAATATGCAGCTGGAGAACTAAAGCCACCTTCAACTGCTTCTACTCGTGGATCTGGAAAGCACCCCCAGCTCATTCCATCAACTCCAAGGTGGGCTGTTGCTAATGGTGCAGGTGTGATATTAAGTGTTTGTGATGAAGAAGTAGCTCGCTATGAGACTGCAACTTTAACAGCAGCTGCAGTTCCTGCACTTCTGCTTCCTCCTCCAACAACAGCTTTGGATGAGCATCTAGTTGCTGGGCTTCCAGCCCTGGAGCCATATGCTCGCCTATTTCATCGCTACTATGCAATTGCTACTCCAAGTGCCACACAACGACTTCTTCTAGGACTACTGGAAGCACCACCATCATGGGCTCCAGATGCTCTTGATGCTGCAGTACAGCTTGTGGAACTTCTTCGGGCAGCTGAAGATTATGCATCAGGCATGAGGCTCCCAAGGAACTGGATGCATTTGCATTTCTTGCGTGCAATTGGTACTGCAATGTCCATGAGAGCAGGGATTGCTGCAGATGCTGCTGCAGCATTACTTTTTCGCGTACTTTCACAGCCTGCATTGCTTTTTCCTCCTCTAAGACAAGTCGAAGGATTTGAATTTCAGCATGAACCTTTAGATGGTTATATTTCATCCTACAAGAAGCAGATAGAAGTGCCTGCAACTGAAGCAACTATTGAAGCCACTGCCCAAGGGATTGCATCAATGCTTTGTGCACATGGTCCCGAGGTTGAATGGAGAATTTGCACCATATGGGAAGCTGCTTATGGCCTAATTCCTTTAAGTTCCTCAGCTGTTGATCTTCCTGAAATTATAGTTGCAACCCCATTGCAACCTCCCATTTTATCATGGAACCTTTATATACCCCTTCTTAAAGTCCTGGAATATCTTCCTCGTGGAAGTCCATCTGAAGCATGTCTCATGAAGATATTTGTTGCTACAGTGGAATCAATTCTTCAGAGGACATTTCCAGCTGACTTCGTACAATGGTCCATGCACTATTTCTAG 1650 45.94 MASSCERWIDGLQFSSLFWPPPQDVQQRKAQITAYVDYFGQFTSEQFPEDIAELIRSRYPSKEQRLFDDVLATFVLHHPEHGHAVVLPIISCIIDGTLVYDRCTPPFASFISLVCPSSENEYSEQWALACGEILRILTHYNRPIYKVEHQSSEADRSSSGRHATTSDSVDGKSSQGPLLQNERKPSRPLSPWITDILLAAPLGIRSDYFRWCGGVMGKYAAGELKPPSTASTRGSGKHPQLIPSTPRWAVANGAGVILSVCDEEVARYETATLTAAAVPALLLPPPTTALDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDYASGMRLPRNWMHLHFLRAIGTAMSMRAGIAADAAAALLFRVLSQPALLFPPLRQVEGFEFQHEPLDGYISSYKKQIEVPATEATIEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVESILQRTFPADFVQWSMHYF* 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 18680236 18701933 - Vvi18g1318 Vvi18g1318 781021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1318 549 PANTHER PROTEIN GIGANTEA-LIKE ISOFORM X1 1 540 - -
Vvi18g1318 549 MobiDBLite consensus disorder prediction 223 244 - -
Vvi18g1318 549 MobiDBLite consensus disorder prediction 149 187 - -
Vvi18g1318 549 MobiDBLite consensus disorder prediction 157 181 - -
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 4 22 IPR026211 GO:2000028
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 122 146 IPR026211 GO:2000028
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 183 203 IPR026211 GO:2000028
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 203 221 IPR026211 GO:2000028
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 232 250 IPR026211 GO:2000028
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 250 271 IPR026211 GO:2000028
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 277 295 IPR026211 GO:2000028
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 301 321 IPR026211 GO:2000028
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 326 345 IPR026211 GO:2000028
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 345 365 IPR026211 GO:2000028
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 377 399 IPR026211 GO:2000028
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 449 472 IPR026211 GO:2000028
Vvi18g1318 549 PRINTS Protein GIGANTEA signature 509 530 IPR026211 GO:2000028
Vvi18g1318 549 PANTHER PROTEIN GIGANTEA 1 540 IPR026211 GO:2000028
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1318 K12124 GI; GIGANTEA - vvi:100254197 1048.5
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1318 . . . . Bpe02g00199 . . Bma01g02522 Cmo04g02577 Cmo15g00583 . . . . Sed11g1376 Cpe06g00912 Cpe13g00698 Bhi04g01748 Tan11g1103 Cmetu03g1200 . Hepe02g2812 . . . . . . . . . Cone4ag1468 . Cone17ag0770 Cone20ag0365 . . . . . Blo18g00145 . Bda13g01418 Bpe02g01107 Bpe14g00439 . . . . . . . Car04g02369 Car15g00537 Cpe01g02131 . Bhi09g01545 Tan01g3069 . . . . . Cla09g00952 Cam09g1003 Cec09g1006 Cco09g1018 . . . . . Chy03g00490 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001222 2 6 3 2 3 2 3 2 2 2 2 2 3 1 2 2 2 3 3 2 2 2 2 2 1 2 2 8 6 1 77