Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1319 ATGGAGAAGAATATGGGGTCATCAACTCTGTATTATCTCTTCATGTTTATGCGCTTTCTCGTTTTACTTTCGGGTTTTCATCTAATGGTGACTGATTCTTCCCCTTCTGTAGTGCAGCACCCACTGTGCCATGGTAGTGATAGCTCCGCATTGCTTGAGTTCAAGCAAAGCTTTTTGATTGAAAAGTTTGCTTCTGGTGATCCTTCTGCTTATCCAAAGGTTGAAATGTGGCAGCCGGAAAGAGAAGGAAGTGACTGCTGCTCATGGGATGGCGTCGAGTGTGACACCAACAATGGCCATGTGATCGGCCTTGACCTCTCTAGCAGTTGTCTCTATGGTTCTATCAACTCTAGCAGCAGCCTCTTCCGTCTTGTTCATCTTCTGAGGCTTGACCTCTCTGATAATGATTTCAATTACTCCAAGATCCCACATGGGGTTGGTCAGCTTTCAAGGCTGACAAGTCTCAACCTGTCCTCTTCCAGATTTTCTGGCCAAATCTCATCACAGATCCTGGAGCTGTCCAAATTGCTCAAGAAACTTCATCTCAACGAGGTGAACATTTCTTCTAGAGTACCTGATTTCCATCACACCAGTTCTCTTAAGTTGTTGGCTCTTGCTGGTACATCTTTCTCTGGTCGGCTACCAACTTCAATCGGAAACCTTGACTCCTTGGTTGAGTTGAATATCAGTTCATGCAACTTCACATCTGGGTTGATTCCATCTTCCCTTGGTCGTCTTATCCAGCTAACCAGTCTAGACCTTTCAAGGAACTCTTTCAGTGGCCAGATCCCTTCTCTTTCAAATCTAAAAGAACTAGATACTTTAGACCTTTCCTACAACCAATTTATTGGTGAAATCCCATCTTGGCTAATGAATCTGACCAGATTAAGGCGTTTGTATCTTGCAGGAAACAGATTGGAGGGTCCAATCCCAAATGAGCTGGAGGTGCTCCTCCTCCGCCAAAACAAAATCCATGGTCCAATTCCAAAATGGTTGATTCCTCCCAATTCCACCACAGTCTCAGAGAATGAACTGAGCGGAGAAATCCCACCATCTTTTTGCAACATGAGTTCTCTTCGGTTACTTGATTTCTCTAGTAACAGTGTGAGTGGTAGGATTCCACTGTGTCTGGCCAACTTCAGCAGTTCTTTGAATGCACTGAATCTTGGAAGCAACAACTTGTATGGGGTCATTCCTCAAGCTTGCACCAGCAGAAACAATTTGATGAAGATCGACTTAGGTGGAAACCATCTAGAAGGGCAAGTACCAACATCACTGGGGAGCTGTCTGATGCTTGAGAAGCTTGATCTTGGAAATAATCAAATAAATGATACCTTCCCCTTTTGGTTGGGAGCTCTTCCGAAGTTGCAGGTTCTCATTTTGCGGTCCAACAAATTCCATGGTGAAATACGAGGACCCAGAACCAATTTTGGGTTTCCCAAGCTGCGTATCATTGACATCTCTCATAATGGTTTTACTGGTAATTTTCCATGGGAATACTTCCAAAGCTGGGATGCCATGAAAATTTTGGAATCAAAACACTTAACATACATGCAGATGGCTGACTGCATTGGGAAAGCCAAGGGGCTTCATTTGCTCAACCTTTCCAACAATGCTCTTACAGTCCAGCTCACGTTCCTTGAGTTCTTCAATGTGTCCCACAACCATCTGAAGGGTCCTATACCACGAGCAAATCAATTTAGTACATTTCCAAATAGCTCATTTGATGGGAACTTAGGATTGTGTGGGAACCCTTTGTCAAGGGATTGTGGAAATCCAGAGGCATCAGCGCCACCTCCTTCAACCTCTGATCAAAGTTCCCCAGGTGAACTTGACTGGATAATTGTATTGTTGGGATATGGAAGCGGGCTGGTAATTGGAGTTCTTATGGGGTACAGATTGACCACAAGGAAACATGAATGGTTTGTGAGGACTTTCGGAAGACAAAAAAGATGGAGGAGGAAAAAATGA 1971 44.04 MEKNMGSSTLYYLFMFMRFLVLLSGFHLMVTDSSPSVVQHPLCHGSDSSALLEFKQSFLIEKFASGDPSAYPKVEMWQPEREGSDCCSWDGVECDTNNGHVIGLDLSSSCLYGSINSSSSLFRLVHLLRLDLSDNDFNYSKIPHGVGQLSRLTSLNLSSSRFSGQISSQILELSKLLKKLHLNEVNISSRVPDFHHTSSLKLLALAGTSFSGRLPTSIGNLDSLVELNISSCNFTSGLIPSSLGRLIQLTSLDLSRNSFSGQIPSLSNLKELDTLDLSYNQFIGEIPSWLMNLTRLRRLYLAGNRLEGPIPNELEVLLLRQNKIHGPIPKWLIPPNSTTVSENELSGEIPPSFCNMSSLRLLDFSSNSVSGRIPLCLANFSSSLNALNLGSNNLYGVIPQACTSRNNLMKIDLGGNHLEGQVPTSLGSCLMLEKLDLGNNQINDTFPFWLGALPKLQVLILRSNKFHGEIRGPRTNFGFPKLRIIDISHNGFTGNFPWEYFQSWDAMKILESKHLTYMQMADCIGKAKGLHLLNLSNNALTVQLTFLEFFNVSHNHLKGPIPRANQFSTFPNSSFDGNLGLCGNPLSRDCGNPEASAPPPSTSDQSSPGELDWIIVLLGYGSGLVIGVLMGYRLTTRKHEWFVRTFGRQKRWRRKK* 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 18753631 18756450 - Vvi18g1319 Vvi18g1319 781022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1319 656 Pfam Leucine rich repeat 248 306 IPR001611 GO:0005515
Vvi18g1319 656 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Vvi18g1319 656 SUPERFAMILY L domain-like 340 587 - -
Vvi18g1319 656 SUPERFAMILY L domain-like 75 236 - -
Vvi18g1319 656 Gene3D Ribonuclease Inhibitor 44 207 IPR032675 -
Vvi18g1319 656 Pfam Leucine rich repeat N-terminal domain 45 95 IPR013210 -
Vvi18g1319 656 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 312 520 IPR045273 -
Vvi18g1319 656 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 42 320 IPR045273 -
Vvi18g1319 656 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 543 631 IPR045273 -
Vvi18g1319 656 SUPERFAMILY L domain-like 182 399 - -
Vvi18g1319 656 Gene3D Ribonuclease Inhibitor 314 597 IPR032675 -
Vvi18g1319 656 ProSiteProfiles Leucine-rich repeat profile. 248 270 IPR001611 GO:0005515
Vvi18g1319 656 Gene3D Ribonuclease Inhibitor 208 313 IPR032675 -
Vvi18g1319 656 PANTHER - 543 631 - -
Vvi18g1319 656 PANTHER - 42 320 - -
Vvi18g1319 656 PANTHER - 312 520 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1319 - - - vvi:100259624 592.038
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1319 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001154 1 1 1 1 1 2 1 2 2 3 1 2 1 3 5 2 2 5 2 2 2 0 3 4 5 2 1 1 3 11 72