Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1320 ATGAATCTTTCACTTCCTTACGCGACCTCTATCCTCTTCTCCTTCCTCATATTTTCCATTTTCATCCCTGCTTTTGCCAGAGGCGGTCAACGCAGCCCCAAATTTTCAGGTGTTATGGATGATAGTTATGTGGGAAATGGACGGCGATTGTCTGAGGTGAATCATTCTAAAGCAAGTGTTGATGTATCACGTGGATATATGACGAATTCTGACCTCGAAAAGGCTGTTAAGGAGTTTGGTCGAAGGTGTAGTAACATTTCCAGGATATATAGTATTGGGAAGAGTGTGAAAGGAGTTCCACTGTGGGTGATGGAAATTTCTGACAAACCAGGGGAGGAAGAAGCAGAACCTGCATTTAAGTTTATTGGAAATGTGCATGGAGATGAACCTGTTGGTCGTGAGCTTCTGTTACTCCTTGCAAATTGGTTATGTGATAACCATATGAAGGATCCCTTGGCAACATTGATCATTGAAAATGTTCACCTGCATATACTTCCTTCCATGAATCCTGATGGATTTTCACTTAGGAGGCGTGGCAATGCAAATAATATTGATCTTAATCGTGATTTTCCAGATCAGTTCTTTCCTCTGAATGATGATGTGGATGGACGACAACCTGAAACAAAAGCAATCATGAGGTGGTTGAAAGAGATACATTTCACAGCATCTGCCAGTTTGCATGGGGGTGCACTTGTTGCAAATTATCCATGGGATGGCACTCAGGATGGAAGGAAAGATTACTATGCATGTCCTGATGATGAGACATTCCAGTTTATGGCAAGCGTATATAGTCGTTCTCATCACAACATGTCTTTGAGCAAGGAATTTGAAGGAGGAATTACAAATGGAGCATTTTGGTACCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTGTTTTGAATTGACACTGGAGATCAGTGACAACAAGTGGCCTAACACTATTGAGCTTCCTACTATATGGGAATATAACAAAATGAGTATGTTAAATCTTGTTGCAAGCCTTGTGAAGACAGGAGTACATGGAAGGATCTTTTCATCAGACAGAGGAAGACCATTGCCTGGCTATATCACAATCAAGGGAATAAATTACACGGTTAAGGCTGGCAGAACATTTGCTGACTACCATCGGCCACTTGCTTCAGGAGAGAAATATGAAGTTGTGGCTACTATGCCAGGTTACAAATCGAAAACCACATCTATCAAATTGGAAGAAGTTACAACAGTAGATTTTCTTCTTGATCCTGAAGTCCTGCCAAGGGGGAACCTACTACGAAGTTTATGTGACTGCAACTGTGAGAGGAAGGGTAGTCTCGAATTGGTTGAGTTTGTTGGGGTCTCCCACTTGGAGGTTTCACTTATTTTAATCGTCATCTTAGTATTCCTTTGCTTTTTATTAAGGAGGAAATTGATATACAACCTTGTAAGACAAAGACACTTAACTGGGCCGAAAAGGTCAGTTGTGGTCTGA 1482 41.36 MNLSLPYATSILFSFLIFSIFIPAFARGGQRSPKFSGVMDDSYVGNGRRLSEVNHSKASVDVSRGYMTNSDLEKAVKEFGRRCSNISRIYSIGKSVKGVPLWVMEISDKPGEEEAEPAFKFIGNVHGDEPVGRELLLLLANWLCDNHMKDPLATLIIENVHLHILPSMNPDGFSLRRRGNANNIDLNRDFPDQFFPLNDDVDGRQPETKAIMRWLKEIHFTASASLHGGALVANYPWDGTQDGRKDYYACPDDETFQFMASVYSRSHHNMSLSKEFEGGITNGAFWYPIYGGMQDWNYIHGGCFELTLEISDNKWPNTIELPTIWEYNKMSMLNLVASLVKTGVHGRIFSSDRGRPLPGYITIKGINYTVKAGRTFADYHRPLASGEKYEVVATMPGYKSKTTSIKLEEVTTVDFLLDPEVLPRGNLLRSLCDCNCERKGSLELVEFVGVSHLEVSLILIVILVFLCFLLRRKLIYNLVRQRHLTGPKRSVVV* 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 18789155 18832323 + Vvi18g1320 Vvi18g1320 781023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1320 493 PANTHER CARBOXYPEPTIDASE D 56 413 IPR015567 GO:0004181|GO:0006518|GO:0008270
Vvi18g1320 493 CDD M14_CP_plant 66 338 - -
Vvi18g1320 493 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 2 signature. 227 237 IPR000834 GO:0004181|GO:0006508|GO:0008270
Vvi18g1320 493 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 92 104 IPR000834 GO:0004181|GO:0006508|GO:0008270
Vvi18g1320 493 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 117 131 IPR000834 GO:0004181|GO:0006508|GO:0008270
Vvi18g1320 493 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 183 191 IPR000834 GO:0004181|GO:0006508|GO:0008270
Vvi18g1320 493 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 224 237 IPR000834 GO:0004181|GO:0006508|GO:0008270
Vvi18g1320 493 Gene3D Zn peptidases 63 339 - -
Vvi18g1320 493 Gene3D - 342 420 - -
Vvi18g1320 493 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 56 413 - -
Vvi18g1320 493 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 1 signature. 117 139 IPR000834 GO:0004181|GO:0006508|GO:0008270
Vvi18g1320 493 SMART zn_carb 66 433 IPR000834 GO:0004181|GO:0006508|GO:0008270
Vvi18g1320 493 SUPERFAMILY Carboxypeptidase regulatory domain-like 343 425 IPR008969 -
Vvi18g1320 493 Pfam Zinc carboxypeptidase 73 329 IPR000834 GO:0004181|GO:0006508|GO:0008270
Vvi18g1320 493 SUPERFAMILY Zn-dependent exopeptidases 64 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1320 - - K07752 vvi:100249088 971.074
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1320 . . . . . . . . Cmo04g02579 . . . . . Sed11g1378 . . Bhi04g01745 Tan11g1099 . . Hepe02g2814 . Lcy10g1371 Cla08g00746 Cam08g1173 Cec08g0763 Cco08g0870 Clacu08g0879 . Cre08g0681 . . . Cone20ag0364 . . . Cme03g01053 Blo17g00133 . . Bda13g01417 . . . Bma02g00153 . . . . . Car04g02372 . Cpe01g02133 . . . . . . . . . . . . . . . Lsi08g00575 . Chy03g00488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010573 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32