Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g133 ATGATGGCTGGTGAGACGAGAGGGAAGCCAATTCGATGCAGAGCTGCGGTTTGTTGGAAGGCAGGGGAGCCGCTGGTGATGGAGGAGGTGATGGTGGCTCCGCCATTGGCCGGAGAAGTTCGGATTCGAATCATCTGCACGTCTCTCTGCTACAGCGACATCACCTTCTGGAAATTAAAGGACCCTCCGGGATGCTTTCCGAGAATACTGGGCCATGAAGCTGTGGGGGTTGTTGAGAGCGTGGGGGAGAATGTGAGTGAAGTAACTGAAGGAGATATTGTGCTTCCAATATTCTTGCCAGATTGCGGAGAATGCACAGATTGCAGATCGGAGAAGAGCAACCTATGTTCAAAATTCCCATTTAAAGTCTCACCTTGGATGCCTAGATATGAAAGCAGCAGATTCACAGACCTTAAGGGAGAGGTTCTCTACCATTTTCTATTTGTCTCAAGTTTTAGTGAGTACACAGTGGTAGATATCGCCAACATTACAAAAATTGACCCCAATATCCCGCCAAACAGGGCATGCCTCTTCAGCTGTGGAGTGTCAACAGGGGTTGGTGCTGCATGGAAAACAGCAAATGTGGAAAAGGGATCCACTGTTGCTATATTTGGGCTAGGGGCGATTGGATTAGCGGTAGCAGAGGGAGCAAGACTATGTGGCGCTTCTAGAATTATTGGTGTGGATTTGAACCCAGATAAATTTGAAATTGGGAAGAAATTCGGAGTCACAGACTTTGTCAACTCTGGAAACTGTGGGAACAAACCAGTGAAACAGGTGATTATGGAGATGACTGATGGAGGGGCAGACTACTGCTTTGAATGTGTTGGTGCAGCATCCTTAGTGCATGAAGCATTTGCTTGCTGCCGAAAGGGTTGGGGAAAGACAATTGTGCTAGGAGTGGACAGGCCGGGTTCAATGTTGAACTTTCTTTCTTTTGACATCCTTCACTCTGGGAAAAGCCTAATGGGAAGTCTGTATGGAGGTGTCAAACCCAAATCTGATATTCCGATTCTTTTAAAACGCTACATGGACAAGGAATTGGATGTGGATAAGTTTGTCACTCATGAGATGAGGTTTGAAGACATCAACAAAGCATTTGATCTACTCATTCAAGGGAAAAGCCTCCGATGTGTGCTTTGGATGGACAAATGA 1155 46.41 MMAGETRGKPIRCRAAVCWKAGEPLVMEEVMVAPPLAGEVRIRIICTSLCYSDITFWKLKDPPGCFPRILGHEAVGVVESVGENVSEVTEGDIVLPIFLPDCGECTDCRSEKSNLCSKFPFKVSPWMPRYESSRFTDLKGEVLYHFLFVSSFSEYTVVDIANITKIDPNIPPNRACLFSCGVSTGVGAAWKTANVEKGSTVAIFGLGAIGLAVAEGARLCGASRIIGVDLNPDKFEIGKKFGVTDFVNSGNCGNKPVKQVIMEMTDGGADYCFECVGAASLVHEAFACCRKGWGKTIVLGVDRPGSMLNFLSFDILHSGKSLMGSLYGGVKPKSDIPILLKRYMDKELDVDKFVTHEMRFEDINKAFDLLIQGKSLRCVLWMDK* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1307368 1311229 - Vvi18g133 Vvi18g133 779836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g133 384 Gene3D - 185 325 - -
Vvi18g133 384 SUPERFAMILY GroES-like 333 381 IPR011032 -
Vvi18g133 384 Pfam Zinc-binding dehydrogenase 208 333 IPR013149 -
Vvi18g133 384 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Vvi18g133 384 PANTHER ALCOHOL DEHYDROGENASE 6 381 - -
Vvi18g133 384 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 6 381 - -
Vvi18g133 384 SUPERFAMILY GroES-like 6 193 IPR011032 -
Vvi18g133 384 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 346 IPR036291 -
Vvi18g133 384 Pfam Alcohol dehydrogenase GroES-like domain 38 165 IPR013154 -
Vvi18g133 384 Gene3D - 16 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g133 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - vvi:100264420 785.793
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g133 Blo01g01352 . . . . . . . Cmo05g01015 . . . . . . . . Bhi04g01548 Tan02g1549 . . Hepe08g1467 . . . . . . . . . . . . Cone20ag0045 . . . Cme03g01364 . . . . . . . . . . . . Cma05g00997 Car05g00879 . Cpe11g00806 . . . . . . . . . . . . . . . Lsi08g00811 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84