Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1330 ATGTATGTTGTGTGTTTGCTGTGTTCTGCGACTCTTAACATACTTTTTGTGGGGAGATATGTGTATGTGAGTGGGAAGTGGGAGGTGGGTTGGAGCAGAAGGGCAGCAGAGGAAGCAGAAGCAGTGGCAGCAGTGTCATGCTCAGGCCATGGAAGAGCATACTTGGATGGTTTGGTTGTTGATGGAAGCCCTGTTTGTGAGTGCAATACCTGCTTTGGAGGCCCTGATTGCTCTCAATTTTCAGCTTCTTGTGTTGCAGATGTTGACAGCGGCGATCCACTGTTCTTGGAGCCCTTCTGGATGCAGCATGCAGCAAGCAGTGCGCTATTAGTAGCAGGTTGGCATCGAATGAGCTATTCATTCCATGATCATTCCTTAATCTCAAAAGAACTAGAGGAGCTCATCCGCAAGCTACATGCCATTGTTGGAAATGCTAACACAACAGGCAGATTCATTGTTTTCGGGGCCGGCTCTATCCAGCTCCTCAATGCTGCAGTTCATGCCCTCTCACCCCATAATTCATCTGCTCCAGCTAAAGTTGTTGCCACAATCCCCTTTTACCCGGTTTATAAATCACAAACAGACTTCTTTCGATCAGTGGACTTCCAGTTTGTAGGTGACACATCCTTGTGGAAGAACACTTCAGATACCACTTCCAATCTCATCGAGTTTGTGACTGCACCCAATAATCCTGATGGAAAGTTGAATAAGGCAGTTCTTCAAGGCCCTAATGCCAAACCCATTTACGATCATGCCTATTACTGGCCGCATTTCACACCAATTCCTGCTCCTGCAGATGAAGACCTCATGATATTTACCTTTTCTAAGCTTACTGGTCATGCTGGGAGTAGATTCGGGTGGGCATTGATAAAGGATAAGGATGTGTACGAGACAATGTCAAATTATATGAGTTTGAACGTCGATGGTGTTTCCCGGGACACTCAGTTAAGAGCTTTCAAGCTTTTAAAAGTAGTGACTCGAGGGAGAGGAAGAGAAATATTCGAATTCGGTTACAAAACAATGAAAGACCGGTGGGAAAAATTGAACAGGGCCTTGCTGATGTCCAGACGTTTCTCTGTCCAGGAAAGTTCACCGCAATACTGCACTTTTTCTGGCAAAGTCAAGAGACCTTCTCCAGCTTATGCATGGCTGAAGTGCGAGAAAGAAGAAGATAAAGAGTGTTACAGAGTCCTGAAAAAGGCTGGCATCATTGGGCGTAATGGTACTTTGTTTAGTGCTAATAGTAGCTATGTTCGGCTCAGCCTCATCAAGACCCAAGATGACTTTGATATATTGCTGCACCAAATCAATAAGTTAGTTGGTGAGGAAAATGGCGGTAAAAGTAGTATGCGAAGAATGAAATCAACCGTCAGTTGA 1377 44.95 MYVVCLLCSATLNILFVGRYVYVSGKWEVGWSRRAAEEAEAVAAVSCSGHGRAYLDGLVVDGSPVCECNTCFGGPDCSQFSASCVADVDSGDPLFLEPFWMQHAASSALLVAGWHRMSYSFHDHSLISKELEELIRKLHAIVGNANTTGRFIVFGAGSIQLLNAAVHALSPHNSSAPAKVVATIPFYPVYKSQTDFFRSVDFQFVGDTSLWKNTSDTTSNLIEFVTAPNNPDGKLNKAVLQGPNAKPIYDHAYYWPHFTPIPAPADEDLMIFTFSKLTGHAGSRFGWALIKDKDVYETMSNYMSLNVDGVSRDTQLRAFKLLKVVTRGRGREIFEFGYKTMKDRWEKLNRALLMSRRFSVQESSPQYCTFSGKVKRPSPAYAWLKCEKEEDKECYRVLKKAGIIGRNGTLFSANSSYVRLSLIKTQDDFDILLHQINKLVGEENGGKSSMRRMKSTVS* 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 18980573 18985327 - Vvi18g1330 Vvi18g1330 781033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1330 458 Gene3D Aspartate Aminotransferase, domain 1 331 441 IPR015422 GO:0003824
Vvi18g1330 458 PANTHER TRYPTOPHAN AMINOTRANSFERASE-RELATED PROTEIN 3 2 445 - -
Vvi18g1330 458 SUPERFAMILY PLP-dependent transferases 31 440 IPR015424 -
Vvi18g1330 458 Gene3D - 28 127 IPR037029 GO:0016846
Vvi18g1330 458 Gene3D - 128 330 IPR015421 GO:0003824
Vvi18g1330 458 CDD AAT_like 87 438 - -
Vvi18g1330 458 Pfam Allinase 86 440 IPR006948 GO:0016846
Vvi18g1330 458 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 2 445 - -
Vvi18g1330 458 Pfam Alliinase EGF-like domain 31 84 IPR006947 GO:0016846
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1330 - - - vvi:100266412 925.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1330 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .