Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1334 ATGCTTGAATGGGGATTCTTTTTGCTTGGGATCGTGTGTGTTTTTTTGTTTTATTCTCTGGGTAACCGGGCAAATTTGCAGAGAAGTTGGGCTGAACTCTGTTGTTTGGGTTGCACGTGCCTGCAGGCCTTTTGGCCGAGGATTGTGATGCGCAAATGGCTCAACATCAGTGCCAGGGAGTCAGATTACAGTGCAGATACCGAGGAAGAGGACAGCGACTCCGGGGATTCCGATACTGAAGATTTTGGTCAATGGGGGAGAGAATCTCGGTTTCGAAATGACCGAGGGGATGGCGTTTCAATTGATCCTAATGATGCTCTACCAAGAAGTAGAAGACGGAAGTCGGAGACTTTCAGGGCTCAGTACATAAACACAAAAGAACTCAGAATATGTGTTGGAACATGGAATGTTGGAGGAAAACTTCCATCTGAAGACTTAGATATTGATGAGTGGTTGGACATCGACAATCCTGCTGACATCTATGTGCTGGGTTTTCAGGAGATTGTACCTTTAAATGCTGGGAACATTTTTGGTGCTGAAGATAGCCGCCCAGTTCCAAGATGGGAAAACATTATTCGTGAAACATTGAATAGAGTTCGACCTATGAAGACAAAGTATAAATGCTATAGTGATCCTCCTTCTCCATCAAGGTTCAAGCCATCTGATGATGTCCCAGACATAGAAGAAGATATACTGCTTGAAACTGATAGTGATGGTGATGAGGTAGTTCATCCATTGGATGAAGAAACTGTTGGTTTTGATGAGACCGGGGATAGACCAGTCACAGGAGACAAAATGTTCATGGATTCGGAAAGGCTGGATAGGTTGAATTGCCTTCGGACAGAAGATTATATGGGAAATGCAGGTGCCCAATCCAATGGGACATTAAACAAGGTACTCAGTGGGCCATCTGTTGCCCAATCCAATAGGATATTAACCAGAACATTCAGTGGATCAGAAAGGATTGGTTTGAGCTGGCCAGAACCTCCATTAGACTTGCTAGCTCAGCGTGTTTTAGAGAGACCGAATTCCTTTAAGGCGATTAAATCTTTCAAAGCGTACAGAAGATCGTGTTTTGTAAGGATAGTAAGCAAGCAAATGGTTGGGATCTTCCTTACTATATGGGTTCGAAGAAGCTTGCGTAAGCATATTCAGAACCTAAAGGTATCTACTGTTGGAGTCGGTGTTATGGGCTACATTGGTAACAAGGGATCAGTATCTGTCAGCATGTCGATATATCAGACATTTTTTTGTTTTATATGTACTCACCTAACAGCGGGTGAAAAAGATGGAGATGAACTCAAAAGAAATGCTGATGTGCAAGAAATACATCGAAGGACTCGTTTTCATCCCGTTTCTAGTATTGGGCTTCCCAAAAGCATCCTTGACCACGAAAGAATTATCTGGCTGGGTGATCTGAATTATCGCATCACCTTGTCCTATGAGAAGACACGAGATCTAATCTCAAAAAAGGAGTGGTCCAAGTTGGTTGCGACAGACCAGCTTGTAAGAGAACTGAGAAAAGGTCGTGCATTTGATGGATGGTCTGAAGGGGTCTTAAATTTCCCACCAACTTATAAATATGAGTCAAATTCAGAGAAGTACTTTGGGGAGGATCCAAAGGCTGGGAGGCGTACTCCATCATGGTGTGACCGCATTCTTTCATATGGTAAGGGTATAAGGCTGCTGACTTATAAGAGAAGTGAGCTGAGGTTTTCAGATCATCGACCTGTAAGTGCTGCTTATATGGCAGAAGTTGAGGTCTTTTCTGCTCGGAAGCTACAACGGGCCCTCACAATCATGGATGCAGAAATTGAAGATGAGGAAATTCTAGCAGATACAGGAGTAGATGTTGGAATGAACTTCTTAAGAGTGGGAAAGGAAGCCAAAGTCATGGAGGGTAAAGGATGA 1911 43.38 MLEWGFFLLGIVCVFLFYSLGNRANLQRSWAELCCLGCTCLQAFWPRIVMRKWLNISARESDYSADTEEEDSDSGDSDTEDFGQWGRESRFRNDRGDGVSIDPNDALPRSRRRKSETFRAQYINTKELRICVGTWNVGGKLPSEDLDIDEWLDIDNPADIYVLGFQEIVPLNAGNIFGAEDSRPVPRWENIIRETLNRVRPMKTKYKCYSDPPSPSRFKPSDDVPDIEEDILLETDSDGDEVVHPLDEETVGFDETGDRPVTGDKMFMDSERLDRLNCLRTEDYMGNAGAQSNGTLNKVLSGPSVAQSNRILTRTFSGSERIGLSWPEPPLDLLAQRVLERPNSFKAIKSFKAYRRSCFVRIVSKQMVGIFLTIWVRRSLRKHIQNLKVSTVGVGVMGYIGNKGSVSVSMSIYQTFFCFICTHLTAGEKDGDELKRNADVQEIHRRTRFHPVSSIGLPKSILDHERIIWLGDLNYRITLSYEKTRDLISKKEWSKLVATDQLVRELRKGRAFDGWSEGVLNFPPTYKYESNSEKYFGEDPKAGRRTPSWCDRILSYGKGIRLLTYKRSELRFSDHRPVSAAYMAEVEVFSARKLQRALTIMDAEIEDEEILADTGVDVGMNFLRVGKEAKVMEGKG* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19034332 19051176 - Vvi18g1334 Vvi18g1334 781037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1334 636 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 44 612 IPR045849 GO:0004445|GO:0046855
Vvi18g1334 636 MobiDBLite consensus disorder prediction 64 113 - -
Vvi18g1334 636 Gene3D Endonuclease/exonuclease/phosphatase 329 613 IPR036691 -
Vvi18g1334 636 SUPERFAMILY DNase I-like 359 598 IPR036691 -
Vvi18g1334 636 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 3 44 612 - -
Vvi18g1334 636 SMART i5p_5 307 590 IPR000300 GO:0016791|GO:0046856
Vvi18g1334 636 SUPERFAMILY DNase I-like 117 211 IPR036691 -
Vvi18g1334 636 MobiDBLite consensus disorder prediction 205 224 - -
Vvi18g1334 636 Gene3D Endonuclease/exonuclease/phosphatase 106 212 IPR036691 -
Vvi18g1334 636 MobiDBLite consensus disorder prediction 64 78 - -
Vvi18g1334 636 MobiDBLite consensus disorder prediction 80 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1334 - - - vvi:100250966 1217.6
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1334 . . . . . . . . Cmo04g02580 Cmo15g00580 . . . . . . Cpe13g00701 Bhi04g01737 . . . . . . Cla08g00742 Cam08g1169 Cec08g0759 Cco08g0867 Clacu08g0876 . Cre08g0677 . . Cone17ag0768 Cone20ag0358 . . . . . . . Bda13g01416 . . Bma01g01429 . . . . . . Car04g02373 Car15g00534 Cpe01g02134 . . . . . . . . . . . . . . . Lsi08g00578 . Chy03g00484 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003115 1 10 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 52