Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1342 ATGATTAAAAATAAAATACTTGATAAAAAAGCCCAGAAAAAAAAAATCCAAAAAGATGAGTGTGGCATCTTCAATTCCATGCATCAAAATCCCAACTTCTTCTTCTTCATCTTCTTCATCATCTTCTTCTTATTAGAACCTGCCCCTCCTCCTCTTCCTCCTAAACCCATCCCCCCTTCTCCCTCTCCTTCTTCTGCTTCTCCTCCTCCATCACCCCCACCACCACCATCTGCCTCTGTGGACAAGAATGTGGTCACTCTGGAGTTTCAGAGGCAAGTAGCTAAGGAGCTTCAGGATTATTTCAAGCAGAGGAAGCTTGAGGAGGCCAATCAGGGTCCTTTCTTTGGCTTCATTGGCAAGAATGAGATTTCCAATGGAAGATGGGCAATGTTCGGTTTTGCTGTTGGGATGCTAACAGAGTACGCAACAGGCTCTGACTTTGTTGATCAAGTAAAGATCCTTCTCTCCAATTTTGGGATAATAGATCTGGAATGA 495 43.23 MIKNKILDKKAQKKKIQKDECGIFNSMHQNPNFFFFIFFIIFFLLEPAPPPLPPKPIPPSPSPSSASPPPSPPPPPSASVDKNVVTLEFQRQVAKELQDYFKQRKLEEANQGPFFGFIGKNEISNGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGIIDLE* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19152606 19156541 + Vvi18g1342 Vvi18g1342 781045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1342 164 Gene3D Chlorophyll a/b binding protein domain 78 157 - -
Vvi18g1342 164 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 49 163 - -
Vvi18g1342 164 SUPERFAMILY Chlorophyll a-b binding protein 110 153 - -
Vvi18g1342 164 MobiDBLite consensus disorder prediction 54 79 - -
Vvi18g1342 164 PANTHER MYB-LIKE PROTEIN U 49 163 - -
Vvi18g1342 164 MobiDBLite consensus disorder prediction 54 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1342 - - - vri:117907930 188.348
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1342 Blo01g01739 . . Bda03g00402 Bpe02g00203 Bpe04g00366 Bma04g00383 . Cmo04g02572 Cmo15g00589 . . . . Sed11g1371 . Cpe13g00694 Bhi04g01756 Tan11g1116 Cmetu03g0534 . Hepe02g2808 . Lcy10g1365 . . . . . . . Cone4ag1473 Cone7ag1467 . . . . . . . . Bda11g00864 . . . . . . . . . . Car04g02365 Car15g00541 Cpe01g02127 . . . . . . . . . . . . . . . Lsi08g00569 . Chy03g00492 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006504 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 38