Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1343 ATGGGCAGCGTTCAGGCCAAATCTTCCATGAATTCACCACCTAGAGGTTTGGAGAAGTTGAAAATAGATAATGGGTATGTGTCAAAAGCGGCCGGACGGAGATCAACTGGTCAGAGGTACCCGGATAAGGACTCTGGTCGGGTTTTAAGGCCTGAATCTGGAAGTAATAAGGTTTTGTTTGTGAGTGGTGATGGTGGTGGGGAGGAGAAATCCATTAATAAAGAGGAAAAGAGAGATGATGGCGGCAGTGAGGTTTCTCACGTTAAAGGGAAAGAAATAGTTGATGGGTGGCCTAATTGGCTCACTGATAATATTCCTAAAAAGGCTCTGGCTGGCTTGGTTCCAAGGAGTGCTGAATCCTTTGAGAAACTCGATAAGATAGGCCAGGGCACCTACAGTAATGTGTATAAAGCTCGGGACAAAGACACTGGAAAAATTGTTGCCTTGAAGAAGGTCAGGTTTGAAACAACTGAACCTGAGAGTGTCAAGTTTATGGCCCGAGAAATTACGATACTACGAGAGCTGGATCATCCCAATGTCATAAAGCTTGAAGGGTTGGTAACATCAAGGATGCAATATAGTCTCTATTTGGTTTTTGACTTCATGCAGTCAGATTTGGCCAGAGTCATTGCCTGTCCTGAAAGGCTTACCGAACCACAGATCAAGTGTTATATGCATCAACTGCTCTCTGGTCTGCAGCATTGCCATGAGAGGGGGATTCTACACCGAGACATAAAGGGGTCCAACCTGTTGATTGATAAAGATGGGAGGCTAAAGATAGCGGATTTTGGGCTTGCGAAACATTTTTATCCTAACCGAAAGCATCCCCTCACAAGCAAGGTTGTGACCCTTTGGTATAGAGCACCTGAGCTATTATTAGGTGCTACAGATTATGGAGTTGGCATTGATCTATGGAGTGCTGGGTGTCTCTTGGCAGAGATGTTCTTGGGGAGGCCAATTATGCCTGGTAGGACTGAGGTTGAGCAAATTCATAGGATTTTCAAGTTATGTGGCACACCCTCAGAGGAATACTGGAAAAAACTAAGAATGCCCACAACCTTCCGACCACCACAAATGTACAAACCTAGTTTGGTTGAAGCTTTCAGGGATTTTCCTACATCTTCTTTGGGTCTTTTGAGCACTCTTCTTGCTCTAGACCCTTCATATCGTGGTTCGGCACGTTCTGCTCTTCAGAATGAATTCTTTCACACATGGCCGTTGGCGTGTGACCTTACAGGTCTACCTGTAATTTACAAAGAGGATGATGAGGCAACTCAAGCCAGAGAGCACAGAAAGTAA 1299 44.88 MGSVQAKSSMNSPPRGLEKLKIDNGYVSKAAGRRSTGQRYPDKDSGRVLRPESGSNKVLFVSGDGGGEEKSINKEEKRDDGGSEVSHVKGKEIVDGWPNWLTDNIPKKALAGLVPRSAESFEKLDKIGQGTYSNVYKARDKDTGKIVALKKVRFETTEPESVKFMAREITILRELDHPNVIKLEGLVTSRMQYSLYLVFDFMQSDLARVIACPERLTEPQIKCYMHQLLSGLQHCHERGILHRDIKGSNLLIDKDGRLKIADFGLAKHFYPNRKHPLTSKVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFLGRPIMPGRTEVEQIHRIFKLCGTPSEEYWKKLRMPTTFRPPQMYKPSLVEAFRDFPTSSLGLLSTLLALDPSYRGSARSALQNEFFHTWPLACDLTGLPVIYKEDDEATQAREHRK* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19179443 19182979 + Vvi18g1343 Vvi18g1343 781046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1343 432 Gene3D Phosphorylase Kinase; domain 1 110 203 - -
Vvi18g1343 432 PANTHER CELL DIVISION PROTEIN KINASE 71 432 - -
Vvi18g1343 432 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Vvi18g1343 432 PANTHER CYCLIN-DEPENDENT KINASE 71 432 - -
Vvi18g1343 432 MobiDBLite consensus disorder prediction 36 50 - -
Vvi18g1343 432 Gene3D Transferase(Phosphotransferase) domain 1 206 430 - -
Vvi18g1343 432 ProSiteProfiles Protein kinase domain profile. 121 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1343 432 SUPERFAMILY Protein kinase-like (PK-like) 116 408 IPR011009 -
Vvi18g1343 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Vvi18g1343 432 SMART serkin_6 121 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1343 432 MobiDBLite consensus disorder prediction 1 86 - -
Vvi18g1343 432 Pfam Protein kinase domain 121 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1343 432 MobiDBLite consensus disorder prediction 68 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1343 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - vvi:100853757 869.766
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1187 Vvi18g1343 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002491 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 0 1 2 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76349 PF00069 Pkinase 1.40E-69 CL0016 Vvi PK