Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1345 ATGAGAAAACTTATGGAGGCTTACACTACCCCACATCTGGTGAAGGGTCTGTCGTGGAGCTTCTATAAAAACTCATGTCCAAAAGTGGAGTCCGTCATCAGAAGGCACCTCAAGAAGGTGTTCAAGAAGGATATCGGCAACGCCGCTGGCTTGCTTCGCCTCCACTTTCATGACTGCTTTGTTCAGGGATGTGATGCCTCAGTGTTGCTAGATGGCTCAGCAAGTGGTCCTGGTGAACAAGAAGCCCCTCCAAACCTGAGCTTGAGAGCCGCAGCATTTCAGATCATCGACGAGCTCCGCGAGCTGGTCGATGAGGAGTGTGGCACTGTTGTTTCCTGCGCTGACATCGTCGCCATCGCCGCCCGTGACTCCGTCCACCTGTCAGGAGGACCCGACTATGATGTCCCCTTGGGAAGGAGAGATGGACTCAACTTTGCCTCAAGAGACGCAACAGTAGCTAACCTACCTTCACCCAACACCAATGCCAGCACCCTTATTGAATTTCTCGCCACCAAAAACTTGGATGCCACAGACCTTGTGGCCCTCTCCGTTTGCCAATGA 561 52.76 MRKLMEAYTTPHLVKGLSWSFYKNSCPKVESVIRRHLKKVFKKDIGNAAGLLRLHFHDCFVQGCDASVLLDGSASGPGEQEAPPNLSLRAAAFQIIDELRELVDEECGTVVSCADIVAIAARDSVHLSGGPDYDVPLGRRDGLNFASRDATVANLPSPNTNASTLIEFLATKNLDATDLVALSVCQ* 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19199495 19202915 - Vvi18g1345 Vvi18g1345 781048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1345 186 Pfam Peroxidase 34 183 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 PANTHER PEROXIDASE 25-RELATED 9 183 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 Gene3D - 17 172 - -
Vvi18g1345 186 PANTHER PEROXIDASE 9 183 - -
Vvi18g1345 186 SUPERFAMILY Heme-dependent peroxidases 16 183 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 PRINTS Plant peroxidase signature 26 45 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 PRINTS Plant peroxidase signature 50 70 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 PRINTS Plant peroxidase signature 91 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 PRINTS Plant peroxidase signature 110 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 PRINTS Plant peroxidase signature 129 144 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 PRINTS Plant peroxidase signature 177 186 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 PRINTS Haem peroxidase superfamily signature 48 62 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 PRINTS Haem peroxidase superfamily signature 111 128 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 PRINTS Haem peroxidase superfamily signature 129 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 PRINTS Haem peroxidase superfamily signature 178 186 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1345 186 ProSitePatterns Peroxidases active site signature. 48 59 IPR019794 GO:0004601
Vvi18g1345 186 ProSiteProfiles Plant heme peroxidase family profile. 16 186 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1345 K00430 - vvi:100854817 358.607