Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1346 ATGTCAGACGCCACATCTGCCACTGCCAGCTTTTTCTTCATTACTCTCTTCCTTGCGGTTATTTTAATCGTTTGCCGAGGACTCAAACAGCGCCGGAGCTCTGAACCCCGGACCCGTCCCATTCAGAGTTCCAGCCTCACCTCTATCTCGGTTGGCGAGAGCGCCACGTTTGACCCCTCGCTGAAACGGATCTCCATGGGGGAGCTCCTCGCTGCCACCAGGAACTTTGCCTCCGACGGCATCATCGGGGACGGCAGCTTCGGCATGGTTTACAAGGCCTGCCTCTCCAACGGCGTCACCGTCGCCGTCAAGAAGCTCAGCCCCGACGCCTTCCAGGGATTCCGGGAGTTCCGGGCCGAGACCGAAACCCTAGCCAAGCTCCAGCACCGGAATATCGTGCAAATCCTCGGGTACTGCGTTTCGGGCTCCGATAGGGTCCTCATCTACGAGTTCATCGAGAAAGGGAGCCTCGATCAATGGCTTCACGACACTTGCAGACGAATTGAGTGGTCGCATTCCCATGTCTCCACCCAGGTCGCCGGCACCATGGGCTACATGCCCCCGGAGTACCGAGAAGGCGTGACCGTGGCAACAGTGAAGGCGGATGTGTACAGTTTTGGGATACTGATGATTGAGATCGCGACTGGGAGGCGCCCCAATTTGCCCACCCGCCTGGATGGTACAGACGTGGGGATAGTGCAATGGGCGCGGAAAATGGTGGCCCAGGAAAGGCATATGGAGATGGTTGATTCCAATGTTTCCAGGGAAGGGTTGAGAGAAAACGAGGTCAGGGAATTGTTCAGAATTGCCCATTTGTGTACCAGTGAGATATCCAGAGACCGCCCACCTATCAGTTTGGTGGTTGATTTGTTGTACCAGCTTTTCTCATGA 891 56.12 MSDATSATASFFFITLFLAVILIVCRGLKQRRSSEPRTRPIQSSSLTSISVGESATFDPSLKRISMGELLAATRNFASDGIIGDGSFGMVYKACLSNGVTVAVKKLSPDAFQGFREFRAETETLAKLQHRNIVQILGYCVSGSDRVLIYEFIEKGSLDQWLHDTCRRIEWSHSHVSTQVAGTMGYMPPEYREGVTVATVKADVYSFGILMIEIATGRRPNLPTRLDGTDVGIVQWARKMVAQERHMEMVDSNVSREGLRENEVRELFRIAHLCTSEISRDRPPISLVVDLLYQLFS* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19223277 19225297 - Vvi18g1346 Vvi18g1346 781049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1346 296 Gene3D Transferase(Phosphotransferase) domain 1 157 294 - -
Vvi18g1346 296 Gene3D Phosphorylase Kinase; domain 1 39 151 - -
Vvi18g1346 296 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 165 292 - -
Vvi18g1346 296 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 6 163 - -
Vvi18g1346 296 PANTHER OS01G0253100 PROTEIN 165 292 IPR045271 GO:0004714|GO:0006468
Vvi18g1346 296 PANTHER OS01G0253100 PROTEIN 6 163 IPR045271 GO:0004714|GO:0006468
Vvi18g1346 296 SUPERFAMILY Protein kinase-like (PK-like) 53 292 IPR011009 -
Vvi18g1346 296 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Vvi18g1346 296 ProSiteProfiles Protein kinase domain profile. 76 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1346 296 Pfam Protein tyrosine and serine/threonine kinase 81 186 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1346 - - - vvi:100854787 310.457
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1346 . . . . Bpe02g00205 . . Bma01g02515 . Cmo15g00590 . . . . . . Cpe13g00693 Bhi04g01757 . . . . . Lcy10g1364 . . . . . . . . . . . . . . Cme03g00296 . . . . . . . . . . . . . Car04g02364 Car15g00542 Cpe01g02126 . . . . . . . . . . . . . . . Lsi08g00568 . Chy03g00493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010752 0 1 0 1 1 0 2 0 0 1 1 1 2 1 0 1 0 0 2 0 1 1 1 0 1 1 1 1 0 1 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76350 PF07714 PK_Tyr_Ser-Thr 2.30E-18 CL0016 Vvi PK