Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1347 ATGATAACTACAAAATATTATTGGATCTTTATGTTCATGCATCTACACATAAAGCAGGAGGAGGATGATATCACTATTTGTGAATGCAAGTACAACACCAATGATCCAGATAGTGCATGTGGAGAGAGGTGCTTGAATGTATTAACTAGCATAGAGTGCACGCCTCACTATTGTCCTTGCAGTGTGCATTGCAAAAATCAGAGATTTCAGAAGCATGAATATGCTAAGACAAAGTTGTTCAGGACTGAAGGCCGAGGGTGGGGTCTTCTTGCCAATGAGGACATTAAGGCAGGAAGATTTATTATTGAGTACTGTGGGGAGGTAATTTCATGGAATGAAGCAAGGGAAAGGTCCCTAGCTTATGCATCTCAAGGCATCAACGATGCGTATATAATTTCTCTGAATGCCAGGGAATGCATTGATGCCACCAAAAGTGGAAGCCAGGCTAGATTTATAAACCATTCATGTGAACCAAATTGTGAGACAAGGAAGTGGTCAGTTTTGGGGGAAGTTAGAATTGGCATATTTGCAATGAGAGATATATCCATTGGAACGGAACTGACTTATGATTATAACTTTCAATGGTATGGTGGTGCCAAGGTTCATTGTCTCTGTGGTGCCACCAGCTGCTGTGGTTTTCTTGGGGCGAAGTCTCGTGGATTCCAGGATACCGATGTATGGGAGGACATTGATGAAAGATGCTCACTGGAAGATAAACCTTCCTTATCCATGCGACCAGAGTCCATGCCAAAGAAAAGGTCAAAAAATAATCATAATGGACCATCAAGACCTCTCAACAGAGAGCAAGTTGATGCTAAATTTGTTGCCCAATTCTTAGCATCAAAGGAAGCTCAAGAGGAGATCCTAAAATATGAGGAACAAAGGGAGGAGGCCTCATCCCATCTCCACTTGTTATACAAGGATGAAGTTGAACCTTCCATAAAAGAAAATGAAATATATGGTATAGATGGTGTGCCAGCCAGTGTGGCTGAGAAATGGATAAGGGCTAGCTGCATGAAACTCAAGGCAGAGTTTAATCTTCATTCCTCCATTATCAGAAATATTGCCTGCACACCTCAAAGAGCACCGGATGAAGCACAACCTTCTGAAGGAGAACCCAAATCAGACGACGTCGTTTCGTTTGGAGTTATTCTCCCATGTCGTCGAGCTCCCCGGCATTCCCAAGCCCCACTTTTCCAATCAACCGCAACAGTGTACCGAAGAACAATTGATTGGAGTAGAAAACTTGATCAACAAATTGAAGGATTACCGGAGTACATACATATTAATCGAAATGATTTCTCTTATAGAAAACATATAAAGCAGCAGGAGGAGGATATTGCAATATGTGAATGCAAGTATGATGCTAATGATCCTGATAGTGCATGTGGAGAAGCATGCTTGAACGTACTAACCAGCACAGAGTGCACACCTGGTTATTGCCGTTGCGGTTTATTTTGCAAAAATCAGAGATTTCAGAAATGTGAATATGCTAAAACAAAGTTGTTCAGAACGGAAGGTCGTGGATGGGGTCTTCTAGCTGATGAAAACATTAAGGCTGGACGATTTGTTATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCAAGGGGAAGGTCCCAAGTTTATGCATCTCTAGGTCTCAAGGATGCATTTATAATTTCTCTTAATGGTAGTGAATGTATTGATGCCACTAAAAAGGGTAGCCTTGGCAGATTTATAAATCATTCATGCCAACCTAATTGTGAAACAAGGAAGTGGACAGTTTTGGGGGAAGTTAGAGTTGGCATATTTGCAAAGCAAGACATATCTATTGGAACAGAACTTGCATATAATTATAATTTTGAATGGTATGGTGGGGCTAAGGTTCGCTGCCTTTGTGGGGCAATCAGCTGCTCTGGTTTTCTTGGGGCAAAGTCTCGTGGATTCCAGGAGGATACTTATCTTTGGGAGGATGGCGATGACAGATACTCAGTTGAGAAAATCCCACTCTATGATTCTGCAGAGGATGAGCCTTCCTCCAAGCTCCCCAGAGTCATGGATTACTCTAAACCTGAATTTATTTCTCATGGGAAACATCAATTGGAATCCACTGAACTTGCCTTTCCTCAAAAGAATGCAATGATACCTCACATCCAAAGTAATAGTGCAAGCCAGAACAATCACATTGGGCCAGGGCATGTGGCAAAAAAGAGATCGAAACATTTTCCTAATGGAAGGTCAAAACCTGTGGCCCAAAAGCAAGTTGATGCAAAATTTGTTGCCCAATTCTTAGGATCAGAGGAGGCTCGTGAGGAGGTCTTCAAATATGAGGAAGAAAAGAATCAGGCCTCTTCACGTCTTGACTCCATATATGATGAAATTCGACCTGCAATTGAAGAACATGAGAGAGATAGTCAAGATAGTGTCCCAACTGAGGTAGCTAGGAAGTGGATAGGGGCCAACTGCAGTAAAATGAAGGCAGACTTTAATCTTTACTCCTCTATCATCAGAAACATTGTCTGTAATCCCCGAAAACCACAAGGTGAAGCAAAAGCTTCTGAAGGAGGAGACAATGAGAATGAAACAAAGGATTTGATAACCTAA 2589 41.64 MITTKYYWIFMFMHLHIKQEEDDITICECKYNTNDPDSACGERCLNVLTSIECTPHYCPCSVHCKNQRFQKHEYAKTKLFRTEGRGWGLLANEDIKAGRFIIEYCGEVISWNEARERSLAYASQGINDAYIISLNARECIDATKSGSQARFINHSCEPNCETRKWSVLGEVRIGIFAMRDISIGTELTYDYNFQWYGGAKVHCLCGATSCCGFLGAKSRGFQDTDVWEDIDERCSLEDKPSLSMRPESMPKKRSKNNHNGPSRPLNREQVDAKFVAQFLASKEAQEEILKYEEQREEASSHLHLLYKDEVEPSIKENEIYGIDGVPASVAEKWIRASCMKLKAEFNLHSSIIRNIACTPQRAPDEAQPSEGEPKSDDVVSFGVILPCRRAPRHSQAPLFQSTATVYRRTIDWSRKLDQQIEGLPEYIHINRNDFSYRKHIKQQEEDIAICECKYDANDPDSACGEACLNVLTSTECTPGYCRCGLFCKNQRFQKCEYAKTKLFRTEGRGWGLLADENIKAGRFVIEYCGEVISWKEARGRSQVYASLGLKDAFIISLNGSECIDATKKGSLGRFINHSCQPNCETRKWTVLGEVRVGIFAKQDISIGTELAYNYNFEWYGGAKVRCLCGAISCSGFLGAKSRGFQEDTYLWEDGDDRYSVEKIPLYDSAEDEPSSKLPRVMDYSKPEFISHGKHQLESTELAFPQKNAMIPHIQSNSASQNNHIGPGHVAKKRSKHFPNGRSKPVAQKQVDAKFVAQFLGSEEAREEVFKYEEEKNQASSRLDSIYDEIRPAIEEHERDSQDSVPTEVARKWIGANCSKMKADFNLYSSIIRNIVCNPRKPQGEAKASEGGDNENETKDLIT* 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19242563 19274978 - Vvi18g1347 Vvi18g1347 781050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1347 862 PANTHER SET DOMAIN PROTEINS 415 800 - -
Vvi18g1347 862 PANTHER SET DOMAIN PROTEINS 16 318 - -
Vvi18g1347 862 SMART set_7 75 198 IPR001214 GO:0005515
Vvi18g1347 862 SMART set_7 498 621 IPR001214 GO:0005515
Vvi18g1347 862 Coils Coil 761 781 - -
Vvi18g1347 862 Pfam SET domain 509 615 IPR001214 GO:0005515
Vvi18g1347 862 Pfam SET domain 86 192 IPR001214 GO:0005515
Vvi18g1347 862 MobiDBLite consensus disorder prediction 238 254 - -
Vvi18g1347 862 MobiDBLite consensus disorder prediction 845 862 - -
Vvi18g1347 862 ProSiteProfiles Post-SET domain profile. 199 215 IPR003616 -
Vvi18g1347 862 ProSiteProfiles AWS domain profile. 445 496 IPR006560 GO:0005634|GO:0018024
Vvi18g1347 862 Coils Coil 281 301 - -
Vvi18g1347 862 MobiDBLite consensus disorder prediction 838 862 - -
Vvi18g1347 862 ProSiteProfiles Post-SET domain profile. 622 638 IPR003616 -
Vvi18g1347 862 ProSiteProfiles AWS domain profile. 22 73 IPR006560 GO:0005634|GO:0018024
Vvi18g1347 862 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 415 800 - -
Vvi18g1347 862 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 16 318 - -
Vvi18g1347 862 SUPERFAMILY SET domain 19 212 IPR046341 -
Vvi18g1347 862 Gene3D SET domain 400 649 IPR046341 -
Vvi18g1347 862 Gene3D SET domain 9 229 IPR046341 -
Vvi18g1347 862 ProSiteProfiles SET domain profile. 498 615 IPR001214 GO:0005515
Vvi18g1347 862 MobiDBLite consensus disorder prediction 238 266 - -
Vvi18g1347 862 SMART PostSET_3 622 638 IPR003616 -
Vvi18g1347 862 SMART PostSET_3 199 215 IPR003616 -
Vvi18g1347 862 ProSiteProfiles SET domain profile. 75 192 IPR001214 GO:0005515
Vvi18g1347 862 SMART shorttest3 22 74 IPR006560 GO:0005634|GO:0018024
Vvi18g1347 862 SMART shorttest3 445 497 IPR006560 GO:0005634|GO:0018024
Vvi18g1347 862 Pfam AWS domain 458 495 IPR006560 GO:0005634|GO:0018024
Vvi18g1347 862 Pfam AWS domain 35 72 IPR006560 GO:0005634|GO:0018024
Vvi18g1347 862 SUPERFAMILY SET domain 398 628 IPR046341 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1347 - - - vvi:100853689 898.656
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1347 . . Bda01g00865 . . . . . . . . . . . . . Cpe13g00692 Bhi04g02533 . . . . . . . . . . . . . . . . . . . . . . Blo18g00148 . . Bpe02g01103 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00567 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010525 1 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14277 PF00856 SET 2.00E-22 No_clan Vvi TR