Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1348 ATGCAATGTGGAATGCTTTTGTTGTGTTCTAGACACATAAAGCAGAAGGAAAATGATATTGCCATCTGTGAATGCAAGTACAAAGCCAATGATCCAGATAGTGCATGTGGAGAGAGGTGCTGGAATGTATTAACTAGCATAGAGTGCACGCCTCGCTATTGTCCATGCAGCATCCATTGCAAGAATCAGAGATTTCAGAAACGTGAATATGCTAAAACGAAGTTGTTCAGGGCTGAAGGCCGTGGGTGGGGTCTTTTGGCTACAGAGAACATTAAGGCTGGAGAATTTGTTATGGAGTACTGTGGAGAAGTGATTTCACGGACAGAAGCAAGGGGAAGGTCCCAAGTTTATGTATCACAAGGCCTTAAGGATGTATATATAATTCCTCTGAATGCTAGGGAATGCATTGATGCAACCAAAAAAGGAAACCTGGCTAGGTTTATAAACCACTCATGCCAACCAAATTGTGAGACAATGAAGTGGTCAGTTTTGGGGGAAGATAGAGTTGGCATTTTTGCATTGAGAAATATATCAGTTGGAACGGAACTGACTTACAGTTACAACTTTGAATGGTATAGTGGTGCCAAGGTTCGCTGCCTTTGTGGGGCAACCAGATGCTCAGGTTTTCTTGGGGGGAAGCCTTGTGGATTCCAGGAGGATTCGTTTGCATGGGAGAAGAACAATGAGAGATACTCAGGGGGGGATAAACCTTCTTCTTCGCTGGGGCCAAAAAAAAGATTAAAACATGATCATAATGGAGGGTCAAGACCCCTCCCAGGAAAGCAAGTTGATGCAAAATATGTTGCCCAATTCTTAGCATCAAAGGATGCTCAAGAGGAGGTCTTAAAAAATGAGGAAGAAAGGAAGGAGGCCTTGTCCCATCTGGCCTCTGTGTACAGGGAGATTGAGCCTGCTATAGAAGATCATGATATGTATGGTCCAGCCAATGTGCTAACTGATGTGGCAGAGCAATGGATAGGGGCCAGCTGCCGGAAACTGAAGGCAGAGTTTAACCTTCATTCCTCTATCATCAGAAATCTTATCTGCCCACCTCAAAGAGCACCAGAAGATGCAAAGCCCTCAGCAGGAGACCCTGATCATGAAATCAAGTGA 1113 44.38 MQCGMLLLCSRHIKQKENDIAICECKYKANDPDSACGERCWNVLTSIECTPRYCPCSIHCKNQRFQKREYAKTKLFRAEGRGWGLLATENIKAGEFVMEYCGEVISRTEARGRSQVYVSQGLKDVYIIPLNARECIDATKKGNLARFINHSCQPNCETMKWSVLGEDRVGIFALRNISVGTELTYSYNFEWYSGAKVRCLCGATRCSGFLGGKPCGFQEDSFAWEKNNERYSGGDKPSSSLGPKKRLKHDHNGGSRPLPGKQVDAKYVAQFLASKDAQEEVLKNEEERKEALSHLASVYREIEPAIEDHDMYGPANVLTDVAEQWIGASCRKLKAEFNLHSSIIRNLICPPQRAPEDAKPSAGDPDHEIK* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19280779 19290355 - Vvi18g1348 Vvi18g1348 781051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1348 370 Pfam SET domain 82 188 IPR001214 GO:0005515
Vvi18g1348 370 ProSiteProfiles SET domain profile. 71 188 IPR001214 GO:0005515
Vvi18g1348 370 SUPERFAMILY SET domain 18 208 IPR046341 -
Vvi18g1348 370 SMART shorttest3 18 70 IPR006560 GO:0005634|GO:0018024
Vvi18g1348 370 ProSiteProfiles AWS domain profile. 18 69 IPR006560 GO:0005634|GO:0018024
Vvi18g1348 370 ProSiteProfiles Post-SET domain profile. 195 211 IPR003616 -
Vvi18g1348 370 MobiDBLite consensus disorder prediction 351 370 - -
Vvi18g1348 370 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 12 310 - -
Vvi18g1348 370 SMART PostSET_3 195 211 IPR003616 -
Vvi18g1348 370 Pfam AWS domain 31 68 IPR006560 GO:0005634|GO:0018024
Vvi18g1348 370 PANTHER SET DOMAIN PROTEINS 12 310 - -
Vvi18g1348 370 Coils Coil 268 295 - -
Vvi18g1348 370 MobiDBLite consensus disorder prediction 228 261 - -
Vvi18g1348 370 Gene3D SET domain 5 230 IPR046341 -
Vvi18g1348 370 SMART set_7 71 194 IPR001214 GO:0005515
Vvi18g1348 370 MobiDBLite consensus disorder prediction 241 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1348 - - - vvi:100853610 751.895
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1348 . . . . . . . . . Cmo15g00591 . . . . . . . Bhi04g01759 Tan11g1119 . . . . . . . . . . . . . . . . . . . Cme03g00297 . . . . . . . . . . . . . . Car15g00543 . . . . . . . . . . . . . . . . . . Chy03g00494 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010525 1 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14278 PF00856 SET 1.80E-23 No_clan Vvi TR