Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1351 ATGAGTAGAAAAGGAGTAACTCCACAATATCCATTTGAATCGTCAATCGGTTTATATAGCCGTTGGTTTACGGAGCTCTCAGAAGGGTTAGCTTTTCGGATCGAGTCGGAATATTTATATCTGGATCAGCGTTGTTCCACCGGTTGTGTGGTGTACATGTGCAAACTGAAGGTGGCGAATCCACGAGACTCAGGCGAGTACGTCAGATTTCGGGCGGCTGGTGGTGGAAATGAAGAGGTAGTGCCACCGCCGCCGCAGCAATCGGAGGAACCCGTGCCGGTGGTTTCTGAAACCATGTATTCAGGGTACAGCAGAGCTTCGGAGATGTCGGCGATGGTGTCGGCGTTGACGCATGTGGTTTCTGGGCAGCGAGCCGGAGATTATGGTTATGCGTCAGGGTTTGTTGGAGCGGCTGGTGGCGTGACGTCGAGTTTCGGGAGTGGTGGTTCCGGGATTTATACTTCTTCATCGCCTTTGTCAGCTTACTCTTCTTCTTCTGGTTCTGGTTCTGCTTCCGGTTCTGCATCTTGGGTTGGACAGAAGAGAGGACGTGAACTCGAAGCTGCAACTCAATATTCTGAAACTGTTCCCAGGGTTTATCGAGGGTTTGGTGATTTCAGAGTTTCTCATAGCGAGTCATCATCTGGTGCAACTGGGACAGAAGAAACTACGAATATGCTGCCACCAACCACCGCCATTCCTGCAACGCCCTCAACTGAACCTGCTTCAAACCAAGAAAGTGGGGAGCGAAGAAGAAGATACAGAGGTGTGAGGCAGAGGCCATGGGGGAAATGGGCGGCTGAGATAAGGGACCCTCACAAAGCTGCGAGAGTGTGGCTGGGTACATTCGATACAGCCGAAGCAGCTGCCAGAGCTTATGATGAAGCTGCGCTCAGATTCAGAGGCAACAGAGCCAAGCTCAACTTCCCAGAAAACGTCAGATTAATGCCACCTCTCCAGGTTTCTCCGGCGACCCAGCTGTCCATCTCCGGTCCGCCTGCAACCCAATTGCCGGTTTCTTCATCGCCGCCGCCCTTTTTTCAGGGCCAGGCCTTGCAGAACCCCGACATTGTCAGAGACTACTGGGAATACTCCCAGTTGCTGCAGAGCTCCGGCGACTTCCATGGACAACAACCCACTAGTTTGTTAGAGCAGATGTTCTATTCCCAATCCTTGGCTTCTCTCCAATCCTCCGCTTCTCTCAGCTCACCATCAATATCATTTTCATCCTTCCTTTATCATATTTTTATTGTAAAAAAAAGGAACAGATCATTAAAGTTAGAGGAAAAAACAAAAACCCATTTACATTTATGCCTAGTTTGA 1323 50.04 MSRKGVTPQYPFESSIGLYSRWFTELSEGLAFRIESEYLYLDQRCSTGCVVYMCKLKVANPRDSGEYVRFRAAGGGNEEVVPPPPQQSEEPVPVVSETMYSGYSRASEMSAMVSALTHVVSGQRAGDYGYASGFVGAAGGVTSSFGSGGSGIYTSSSPLSAYSSSSGSGSASGSASWVGQKRGRELEAATQYSETVPRVYRGFGDFRVSHSESSSGATGTEETTNMLPPTTAIPATPSTEPASNQESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRLMPPLQVSPATQLSISGPPATQLPVSSSPPPFFQGQALQNPDIVRDYWEYSQLLQSSGDFHGQQPTSLLEQMFYSQSLASLQSSASLSSPSISFSSFLYHIFIVKKRNRSLKLEEKTKTHLHLCLV* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19427036 19431008 - Vvi18g1351 Vvi18g1351 781054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1351 440 MobiDBLite consensus disorder prediction 210 244 - -
Vvi18g1351 440 PANTHER DNA-BINDING DOMAIN 103 408 IPR044808 GO:0003700|GO:0009873
Vvi18g1351 440 ProSiteProfiles AP2/ERF domain profile. 253 310 IPR001471 GO:0003700|GO:0006355
Vvi18g1351 440 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 103 408 - -
Vvi18g1351 440 MobiDBLite consensus disorder prediction 210 257 - -
Vvi18g1351 440 Gene3D AP2/ERF domain 252 312 IPR036955 GO:0003700|GO:0006355
Vvi18g1351 440 SUPERFAMILY DNA-binding domain 253 311 IPR016177 GO:0003677
Vvi18g1351 440 SMART rav1_2 253 316 IPR001471 GO:0003700|GO:0006355
Vvi18g1351 440 CDD AP2 261 312 IPR001471 GO:0003700|GO:0006355
Vvi18g1351 440 Pfam AP2 domain 253 302 IPR001471 GO:0003700|GO:0006355
Vvi18g1351 440 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700|GO:0006355
Vvi18g1351 440 PRINTS Ethylene responsive element binding protein signature 276 292 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1193 Vvi18g1351 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14279 PF00847 AP2 8.90E-15 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1351 - - vvi:100262406 573.933