Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1355 ATGACGGAGCCTTCCAAAGTCATTCATGTTCGTAATGTGGGGCATGAAATATCAGAGAATGATTTGCTTCAGCTGTTCCAACCATTTGGCGTCATTACTAAGCTTGTGATGCTTCGTGCAAAAAATCAGGCTCTCCTCCAAATGCAAGATGTTCCCTCAGCTGCCAATGCAATGCAATTCTACACGAATGTTCAGCCAAGCATAAGGGGGAGGAACGTCTATGTTCAGTTCTCATCACATCAAGAACTAACAACAGTGGATCAGAATGCTCAAGGACGAGGAGATGAGCCTAATCGAATTCTCTTAGTTACAATTCATCACCTGCTATACCCTATAACAGTGGAGGTGCTGCATCAAGTGTTTTCTCCTCATGGTTTTGTGGAGAAGATTGTCACGTTTCAGAAGTCAGCTGGTTTTCAAGCCCTTATCCAGTATCAATCACGCCAGAGTGCAGTTGCAGCAAGGAATTCTCTTCAGGGACGCAATATCTATGATGGTTGCTGTCAGCTTGACATTCAATTTTCAAACCTTGATGAGTTACAAGTGAACTACAATAATGAGCGCTCTAGGGACTTCACAAATCCATCTCTGCCTTCAGAGCAGAAAGGCAGATCTTCACAGTCTGGTTATGGTGATGCAGGAGGTATGTATGCCCTTCAACCAGGAGCCAGGACAGTTGGATTTCCACAGATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCTGGAATTAGTGGGACAAATGACAGGTGTACTGTCCTTGTCTCTAATCTAAATCCTGACAGAATAGATGAAGATAAGCTTTTCAACCTGTTCTCCATCTATGGAAACATTGTCAGAATTAAGCTGCTCCGCAATAAGCCAGATCATGCACTAGTCCAAATGGGTGATGGCTTCCAGGCCGAGTTGGCAGTACATTTTCTGAAGGGAGCCATGCTATTTGGAAAGAGATTGGAGGTGAACTTCTCGAAGTATTCAAACATAACTACAGGTGCTGATACACACGAGTATATGAACTCAAGTCTTAACCGCTTCAACCGTAATGCTGCAAAGAATTACCGCTACTGCTGTTCCCCTACAAAGATGATCCATGTGTCCACTCTTAACCAGGACATCACGGAGGAGGAGATTGTGTCTCACCTGGAGGAACATGGCACCATTGTCAACACCAAGCTCTTTGAGATGAATGGGAAGAAGCAGGCTCTGGTGATGTTTGAAAATGAGGAGCAGGCAACTGAAGCTCTTGTATGCAAGCATGCCACCCCCCTTGGTGGATTAGCAATCCGCATTTCCTTTTCCCAGTTGCAGGGTATATAG 1332 45.27 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAANAMQFYTNVQPSIRGRNVYVQFSSHQELTTVDQNAQGRGDEPNRILLVTIHHLLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARNSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPSEQKGRSSQSGYGDAGGMYALQPGARTVGFPQMPNASAIAAAFGGGLPPGISGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKYSNITTGADTHEYMNSSLNRFNRNAAKNYRYCCSPTKMIHVSTLNQDITEEEIVSHLEEHGTIVNTKLFEMNGKKQALVMFENEEQATEALVCKHATPLGGLAIRISFSQLQGI* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19481411 19491537 - Vvi18g1355 Vvi18g1355 781058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1355 443 MobiDBLite consensus disorder prediction 188 211 - -
Vvi18g1355 443 SUPERFAMILY RNA-binding domain, RBD 254 437 IPR035979 GO:0003676
Vvi18g1355 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Vvi18g1355 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 433 IPR000504 GO:0003723
Vvi18g1355 443 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 442 - -
Vvi18g1355 443 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 442 - -
Vvi18g1355 443 CDD RRM1_PTBPH3 6 80 IPR034795 -
Vvi18g1355 443 Gene3D - 350 442 IPR012677 -
Vvi18g1355 443 Gene3D - 1 96 IPR012677 -
Vvi18g1355 443 MobiDBLite consensus disorder prediction 188 208 - -
Vvi18g1355 443 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 439 IPR006536 GO:0003723|GO:0005634|GO:0006397
Vvi18g1355 443 SUPERFAMILY RNA-binding domain, RBD 96 198 IPR035979 GO:0003676
Vvi18g1355 443 SMART rrm1_1 7 76 IPR000504 GO:0003723
Vvi18g1355 443 SMART rrm1_1 367 436 IPR000504 GO:0003723
Vvi18g1355 443 SMART rrm1_1 257 326 IPR000504 GO:0003723
Vvi18g1355 443 SMART rrm1_1 102 171 IPR000504 GO:0003723
Vvi18g1355 443 CDD RRM3_PTBPH3 255 330 IPR034797 -
Vvi18g1355 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 440 IPR000504 GO:0003723
Vvi18g1355 443 CDD RRM2_PTBPH3 97 184 IPR034796 -
Vvi18g1355 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Vvi18g1355 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 342 - -
Vvi18g1355 443 Gene3D - 253 349 IPR012677 -
Vvi18g1355 443 Gene3D - 98 202 IPR012677 -
Vvi18g1355 443 CDD RRM4_PTBPH3 359 437 - -
Vvi18g1355 443 Pfam RRM-like domain 96 175 IPR021790 -
Vvi18g1355 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Vvi18g1355 443 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1355 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - vvi:100243429 886.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1197 Vvi18g1355 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004715 2 1 2 2 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 2 41