Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g136 ATGGAAGTTACAATCATCTCCAGAGAAACCATTAAGCCTTCTTCACCAACACCCCATCACCTCAGGGCCTTCAAGCTCTCCCTCTTGGATCAGCTCGTTCCTTGTTGCTACACCCAAGTCCTCCTTTTCTATCTCATCGACGGCTTCCATGGCCAATCAATCGAAACCTCCCATATCTCAACTAGGTTGAAGGATTCTCTATCTGAAACCCTAACTCACTTCTACCCTCTAGCTGGAAGCATCGGTGATGATGAACTTCAGATTGACTGTAATGATGAGGGTGTGCCTTACTTTGAAGCTAGAGTTGACTGCAACCTCTCAGAGTTTCTCCAAGAACCTGAGCTTGAGTTATTAAATCAATTTTTTCCTTGTGATCCTCTTAATACTCCTCCAATGGCTAAGCTTCATCTAGCTATGATCCAAGTTAACATCTTTAATCGTGGGGGAATCGCCATTGGTGTGTGCCTTTCTCATAAGATTGCCGATGGGGTCTCCATCAGTGCTTTTCTCAAAGCTTGGGCCGCAATCGCTCGGGGCTGTTTTGAGGAGTACCCCAGTTTTGAAGCAAAATCACTCTTCCCACAAAATGAATCACTCCCACAAGACTACTCCATGGTTCTAGGAAAATGCTTGATCAGAACAGGCAAATGTGTTACCAAGAGGGTTGTGTTTGATGCATCTGCCATAGCCGCCCTTAAAGCCAAAGCCTCTGTAGACTGCACCCGAGTCGAGGTGGTGTCCGCCTTCATATGGAAGCGTGCCATGGCCGCTGCCAAGCAAAAACTTGGATTCCAAAGGTCTTCCATACTCACCCACGCAGTGAACTTGAGGAAAAAAACCATCCTATCGTTGCCAGAATCCTCCATGGGAAACCTCTTCTGGATAGCAATCACAGAAGGCAGGGTTGATGATGAAGCTGAACTGGACCTCTTGGTTGATAAAACAAGAAAGGCTATATCAAAAATCAGCTGCGATTTTGCGAAGAAGCTACAGGGTGAAGAAGGCTTTGCAGTGGCTTTTGAACATGTTAAAGAGGTAAAAGCAGCGTTTGAGGAAGATGGAGTGGACTTCTATGGGTTCAGCAGTTGGTGCAAATTTGAAGTGTATGAGGGTGATTTTGGATGGGGAAGGCCTATATGGGCCCACTTTGAAAAAGATTTAATGGGGCTGACCAACACAAAACCTCGTAAGCCCATTACAAATCAGGCCATTGTACCATTCTCACACACTGTTTCACTAGCACCAATGGCTTCTTCTTCTTCTTCGAGCTCTGCCTCAAACTTCCAAAACCCTAACAAGAAGAAGACGCTAGGGTTAATTGCTAATGCATTGAAACGTAAAGACAGCTTCATACAGTTCTTCGCCATGTCTGGAATCTTTCTCCTCAGCCTCAGATCCCTCGGTCAGAAGTACCGCCTCAATGATCTTCAAGAAGATACTGCCTCTCTCAAAGAGGAACAGAAAGGGCTCCATGATCGCATGAATCACATCAAGCGCAGCCTCCTTCACGAAGCTTCTCTTGACTCCACCGGCCTCTTCGCTTCCCGGCTTCGCCTTCTCTTCGGTGACGACCATATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCAAATCAGGATCAACTAGGATAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAACTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGTTTCAATCGGGTTATTCTATTCCACCTCTTAGAAAAGAACTTAAATCAGCTTTTCTCAAGTCTGAGATGAATGATATAGGACCAGAACATTGGAAATTGAACTTCCGTGTTGAACATGGTTCTTAA 1896 44.78 MEVTIISRETIKPSSPTPHHLRAFKLSLLDQLVPCCYTQVLLFYLIDGFHGQSIETSHISTRLKDSLSETLTHFYPLAGSIGDDELQIDCNDEGVPYFEARVDCNLSEFLQEPELELLNQFFPCDPLNTPPMAKLHLAMIQVNIFNRGGIAIGVCLSHKIADGVSISAFLKAWAAIARGCFEEYPSFEAKSLFPQNESLPQDYSMVLGKCLIRTGKCVTKRVVFDASAIAALKAKASVDCTRVEVVSAFIWKRAMAAAKQKLGFQRSSILTHAVNLRKKTILSLPESSMGNLFWIAITEGRVDDEAELDLLVDKTRKAISKISCDFAKKLQGEEGFAVAFEHVKEVKAAFEEDGVDFYGFSSWCKFEVYEGDFGWGRPIWAHFEKDLMGLTNTKPRKPITNQAIVPFSHTVSLAPMASSSSSSSASNFQNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLNDLQEDTASLKEEQKGLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDDHIRLLGKNQYTSNVKSGSTRIEIKHWVELFFGVKVITMNSHRLPGKGRRMGPIMGHTMHYRRMIITFQSGYSIPPLRKELKSAFLKSEMNDIGPEHWKLNFRVEHGS* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1343782 1349354 + Vvi18g136 Vvi18g136 779839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g136 631 Gene3D - 517 598 IPR012677 -
Vvi18g136 631 Hamap 50S ribosomal protein L23 [rplW]. 494 602 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi18g136 631 Pfam Transferase family 1 381 - -
Vvi18g136 631 Gene3D - 215 410 IPR023213 -
Vvi18g136 631 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 524 599 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vvi18g136 631 Pfam Ribosomal protein L23 527 597 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi18g136 631 PANTHER VINORINE SYNTHASE-LIKE 3 381 - -
Vvi18g136 631 PANTHER F21J9.9 3 381 - -
Vvi18g136 631 Coils Coil 473 493 - -
Vvi18g136 631 Gene3D - 1 206 IPR023213 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g136 - - - vvi:100264373 758.059
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g136 . . . . . Bpe04g00016 Bma04g00023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car09g00061 . Cpe02g00877 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014363 0 0 1 0 0 0 0 0 0 0 1 0 0 1 5 1 0 0 0 0 0 0 1 0 0 2 0 3 1 2 18