Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1360 ATGGATACCAAAGGAAGACTCGTGGCGGGTTCACACAACCGGAACGAGTTTGTTCTGATCAATGCTGATGAGATTGGACGAGTGACTTCCGTGAAAGAATTGAGTGGGCAGATTTGTCAGATTTGTGGGGATGAGATAGAGATTACTGTGGATGGGGAGCCATTCGTTGCCTGTAATGAATGTGCATTCCCTGTATGCAGACCCTGCTACGAGTATGAAAGAAGGGAGGGTAATCAAGCTTGCCCTCAATGCAAAACCAGATACAAACGCATCAAAGGTAGTCCCAGAGTTGAAGGGGATGAAGAGGAAGATGACATTGATGATTTGGAGAATGAGTTTGATTTCAGAAGCAATTACAGTAGGGATCCTCATCAGGTTGCAGAGGCTATGCTCTCTGCTCACCTGAACATCGGCAGCCATGCCCATACTTCAGGGATTAGTACGCCTTTGGATCTGGATTCTTCATCAGTCCCTTCAGGAATCCCTCTTCTGACCTATGGCCAATATGATGTCGGGATTTCCTCTGATAAGCACGCCCTTATCATTCCTCCATTCATGGGGCGTGGAAAACGAGTCCATCCTATGCCATTTCCTGATTCTTCTATGTCCTTGCCACCCAGACCAATGGATCCTAAGAAAGACCTGGCAGTATATGGGTATGGAAGTGTTGCGTGGAAGGACCGAATGGAAGAGTGGAAGAAAAAGCAGAATGATAAACTTCAGGTTGTTAAGCACCAAGGAGGAAATGATGGTGGAAACTTTGATGAAGATGAACTGGATGATCCTGATTTGCCCAAGATGGATGAAGGCAGGCAACCTCTATCTAGAAAAATACCAATTCCTTCAAGCAAGATAAATCCATACAGAATCATAATTATACTCCGGCTTGTGATTCTTGGCTTCTTCTTTCATTATAGAATCCTCCACCCGGTTAATGATGCATATGCATTATGGTTAACATCAGTTATTTGTGAAATATGGTTTGCTGTATCATGGATACTGGATCAGTTCCCAAAGTGGTACCCAATCGAGCGGGAAACATACCTTGATAGGCTATCACTGAGGTATGAAAAAGAAGGGAAGCCATCTGAATTAGCTGATATAGACATATTCGTAAGTACAGTTGATCCCATGAAAGAACCTCCACTTATCACAGCAAACACAGTTCTGTCAATCCTTGCAGTAGATTATCCAGTCGAGAAAGTTGCATGCTATGTCTCAGATGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCTGAGACATCTGAGTTTGCTAGGAGGTGGGTCCCATTCTGTAAGAAGTTCAGCATTGAGCCGAGGGCCCCAGAATGGTACTTTGCTCAGAAGGTTGACTATCTGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAGAGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCCCAGAAGGTCCCCGAGGAAGGTTGGACAATGCAGGATGGGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCTCGTCTAGTTTATGTGTCTCGTGAGAAGAGACCGGGATTTGATCACCACAAAAAAGCTGGGGCAATGAATGCTTTGATGCGAGTCTCAGCAATCATCTCTAATGCTCCTTACCTACTGAACGTGGACTGTGATCACTATATAAACAACAGTAAGGCCCTTCGTGAAGCCATGTGCTTCATGATGGACCCCACATCAGGAAAGAAAATCTGTTATGTACAGTTTCCTCAAAGGTTTGATGGGATTGATCGCAATGATAGATACTCAAATCGCAACGTTGTATTCTTTGATATCAATATGAAAGGTTTGGATGGGATCCAGGGACCAATTTATGTTGGAACTGGCTGTGTCTTCAGACGGCAGGCACTCTATGGATATGATGCCCCTGTCAATAAGAAACCCCCAGGAAAGACGTGTAATTGTTGGCCAAAATGGTGCTGCTTGTGTTGTGGATCAAGGAAGAAAAACAAGAAAGTGAAGTCAACTGACAAAAAGAAGAAGATGAAAAACAGGGAAGCTTCAAAGCAAATACATGCACTCGAAAATATTGAAGAGGGAATTGAAGGAATAGATAATGACAGATCATTGCTCATGCCCCAAGTGAAATTTGAGAAAAAATTTGGACAGTCTCCGGTTTTTATAGCTTCCACGCTTTTAGAAGAAGGTGGTGTTCCAAAAGGAGCAACCACTGCTTCACTTTTGAAAGAAGCCATCCATGTCATTAGCTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGGTGGATATATGGCTCTGTTACAGAGGATATATTAACAGGATTCAAGATGCAATGCCATGGTTGGCGATCAGTGTACTGCATACCCAAGAGGCCGGCATTTAAGGGGTCAGCTCCCATTAACCTGTCAGATCGTTTACACCAGGTTCTACGTTGGGCACTTGGATCTGTTGAGATTTTCTTCAGTAGGTATTGCCCTATATGGTATGGCTATGGAGGTGGTTTGAAATGGTTGGAGCGCTTCTCTTATATCAACTCAGTTGTTTATCCGTGGACGTCCATTCCCTTGATTGCCTACTGTACCTTGCCGGCTTTCTGTCTCCTCACTGGGAAGTTCATTGTCCCCGAGATTAGCAACTATGCCAGTATTATTTTCATGGCCCTCTTCATATCTATAGCTGCAACTGGTGTCCTTGAGATGCAGTGGGGACGGGTTGCCATAGATGACTGGTGGAGAAATGAGCAGTTCTGGGTGATTGGTGGTGCTTCATCACATCTGTTTGCTCTCTTCCAAGGTCTGCTTAAGGTTTTGGCAGGTGTTAACACAAACTTCACTGTTACATCCAAAGGAGGAGATGATGGAGAGTTTTCGGAGCTCTACCTTTTTAAGTGGACATCTTTGTTGATCCCTCCCCTGACGTTACTGATCCTGAATATAATTGGGGTCATGGTTGGGATTTCAGATGCCATCAATAACGGTTATGAAGAATGGGGCCCTCTATTTGGTAAGCTGTTCTTTGCCTTATGGGTCATTGTTCACCTGTACCCCTTCCTCAAGGGAGTCAACCCATTTGTATCAAAAGGTGGTATTGTATTAGAAGTCTGTGGATTGGATTGTGACTAG 3204 44.13 MDTKGRLVAGSHNRNEFVLINADEIGRVTSVKELSGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDFRSNYSRDPHQVAEAMLSAHLNIGSHAHTSGISTPLDLDSSSVPSGIPLLTYGQYDVGISSDKHALIIPPFMGRGKRVHPMPFPDSSMSLPPRPMDPKKDLAVYGYGSVAWKDRMEEWKKKQNDKLQVVKHQGGNDGGNFDEDELDDPDLPKMDEGRQPLSRKIPIPSSKINPYRIIIILRLVILGFFFHYRILHPVNDAYALWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSEFARRWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVHPEFVRERRAMKREYEEFKIRINALVSMAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGHNGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNALMRVSAIISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRNDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVNKKPPGKTCNCWPKWCCLCCGSRKKNKKVKSTDKKKKMKNREASKQIHALENIEEGIEGIDNDRSLLMPQVKFEKKFGQSPVFIASTLLEEGGVPKGATTASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMQCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRYCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLIAYCTLPAFCLLTGKFIVPEISNYASIIFMALFISIAATGVLEMQWGRVAIDDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFSELYLFKWTSLLIPPLTLLILNIIGVMVGISDAINNGYEEWGPLFGKLFFALWVIVHLYPFLKGVNPFVSKGGIVLEVCGLDCD* 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19565381 19573457 - Vvi18g1360 Vvi18g1360 781063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1360 1067 SUPERFAMILY RING/U-box 27 111 - -
Vvi18g1360 1067 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1048 - -
Vvi18g1360 1067 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Vvi18g1360 1067 Pfam Cellulose synthase 368 1048 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi18g1360 1067 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Vvi18g1360 1067 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Vvi18g1360 1067 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 662 IPR029044 -
Vvi18g1360 1067 MobiDBLite consensus disorder prediction 237 275 - -
Vvi18g1360 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Vvi18g1360 1067 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1048 - -
Vvi18g1360 1067 SUPERFAMILY Nucleotide-diphospho-sugar transferases 381 913 IPR029044 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1200 Vvi18g1360 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1360 K10999 - vvi:100255463 2125.52