Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1363 ATGGCCACCTCGCTCACTTTCTCTACAGTTCGTGCGTTGAATTCTCAACGCCCCACTCCTTTAGCCTTTTCTTCTTCCTCCCCTTCTTCCAAGCTCTTCTCATCGTCCCCCTTGCAGTTTCCTAGGCAGCTCCGCCCTATTCGAATCGGCAACAACGGAATTTCATCCCCGTCTAGGCCTCGAACCCTTCCTGTGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTGGATGAATTGCTAGCAAATTCTGAAAAACCTGTTCTGGTAGACTTCTATGCAACTTGGTGTGGCCCTTGTCAGTTCATGGTTCCTATCCTCAACGAAGTCGGTGCTTCTCTGAAAGACAAGATCCAGGTGGTGAAAATTGATACTGAGAAATACCCGAGCATTGCTGATAAGTACAGAATAGAGGCATTGCCTACTTTCATCATATTTAAAGATGGGAAGCCATATGATCGCTTTGAAGGTGCTTTGACTGCAGATCAGCTCATCCAGCGCATTGAGACCACACTAAAAGTGAAACAATAG 528 46.02 MATSLTFSTVRALNSQRPTPLAFSSSSPSSKLFSSSPLQFPRQLRPIRIGNNGISSPSRPRTLPVVEAKKQTFSSLDELLANSEKPVLVDFYATWCGPCQFMVPILNEVGASLKDKIQVVKIDTEKYPSIADKYRIEALPTFIIFKDGKPYDRFEGALTADQLIQRIETTLKVKQ* 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19593286 19597222 - Vvi18g1363 Vvi18g1363 781066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1363 175 Gene3D Glutaredoxin 56 174 - -
Vvi18g1363 175 Pfam Thioredoxin 72 168 IPR013766 -
Vvi18g1363 175 ProSiteProfiles Thioredoxin domain profile. 52 172 IPR013766 -
Vvi18g1363 175 ProSitePatterns Thioredoxin family active site. 88 106 IPR017937 -
Vvi18g1363 175 CDD TRX_family 74 168 - -
Vvi18g1363 175 PANTHER THIOREDOXIN Y1, CHLOROPLASTIC 15 174 - -
Vvi18g1363 175 PANTHER GEO12009P1 15 174 - -
Vvi18g1363 175 SUPERFAMILY Thioredoxin-like 72 172 IPR036249 -
Vvi18g1363 175 PRINTS Thioredoxin family signature 87 95 - -
Vvi18g1363 175 PRINTS Thioredoxin family signature 95 104 - -
Vvi18g1363 175 PRINTS Thioredoxin family signature 135 146 - -
Vvi18g1363 175 TIGRFAM thioredoxin: thioredoxin 73 169 IPR005746 GO:0015035
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1363 - - - vvi:100245159 333.183
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1363 . Blo12g00783 . Bda03g00395 . Bpe04g00357 Bma04g00373 . . . . Cma09g01174 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0373 . . . . . . . . . . . . . . Cmo09g01181 . . . . . . . . . . . . . . . . . . . . . . Chy03g00253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013186 1 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 1 1 0 0 1 1 1 1 1 1 1 2 1 27