Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1369 ATGGATTGCGATGAGTTTCGATCGATCTTGGAGAGTTCGGGTGTGGATGTGTGGACATTGATAGAAACAGCAGTGTCTGTAGCGTCTGTGGATTACAGCGAAGAATTCAAGGGCCGAAGAGATAGCATCGTCGAACGGCTTTATACGCCTGTGGTTTCGCGATGCCTGAACTGCGATCGCGATCGTATTCATAAGCCAAATGGTGATCGGTCTGTGAAGGAAAAGATGGATCAGTTGCAAGACGAGTCCTGGATTGAGACGCCAGAGTCAGTGGAGAGGGATAGAGATGGATCAATCGATGAAGAGCAGTCTAAGATTCTTGCGATCAAGGAGCGCCTTGAAGATCCTGATCAGTTAGAGGATTCTCTGGTTGATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAGGAAACTGACATCGGACGGCACGTGAACCGATTACGGAAGCATCCATCCAATGAAGTTCGAAGGCTGGTTAAGCAACTCGTCAGGAAGTGGAAAGATCTGGTTGACGAATGGGTGAAACTGAGTACACCTGGGGAAACTACAGCTTCTGCAATTGTTGCTGATGGAGACTCTCCTCAACAGAACCACCTGAAAAGCACCTCCAATGTTCATCACCAGGTACCTGATTTTGCATATTCTCCAAATCCACACAATGGAAGCTCTGGTTCTGACAAGAACAATGTGGAACTTGAACCGAAAAGGAAGGCAGTTCCCCGAAGAGAAACTCCAAATAAGCCAAACCAAACGCCTCCCATTCCTACTTCTGTTGCTCTAAATAAACAGAGGGAGCAGAAAGACAGCCTCGTAGATGAAGAAAAATTGGCTTCGGCTAGAAGGCGGCTTCATGAGAATTATCAGGAAGCTCAAAATGCAAAAAAACAGAGAACAATTCAAGTGATGGATATTCATGACATTCCCAAACCCAAGAATACATTCTTTGCCAAGAACAGGGGAGGCGTTCAGGCAAAACATTGGTGA 999 45.85 MDCDEFRSILESSGVDVWTLIETAVSVASVDYSEEFKGRRDSIVERLYTPVVSRCLNCDRDRIHKPNGDRSVKEKMDQLQDESWIETPESVERDRDGSIDEEQSKILAIKERLEDPDQLEDSLVDLLQSLADMDITFKALKETDIGRHVNRLRKHPSNEVRRLVKQLVRKWKDLVDEWVKLSTPGETTASAIVADGDSPQQNHLKSTSNVHHQVPDFAYSPNPHNGSSGSDKNNVELEPKRKAVPRRETPNKPNQTPPIPTSVALNKQREQKDSLVDEEKLASARRRLHENYQEAQNAKKQRTIQVMDIHDIPKPKNTFFAKNRGGVQAKHW* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19675812 19677806 + Vvi18g1369 Vvi18g1369 781072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1369 332 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 96 189 IPR035441 -
Vvi18g1369 332 MobiDBLite consensus disorder prediction 213 273 - -
Vvi18g1369 332 Pfam TFIIS helical bundle-like domain 126 175 IPR017923 -
Vvi18g1369 332 ProSiteProfiles TFIIS N-terminal domain profile. 101 178 IPR017923 -
Vvi18g1369 332 MobiDBLite consensus disorder prediction 234 248 - -
Vvi18g1369 332 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 332 - -
Vvi18g1369 332 MobiDBLite consensus disorder prediction 213 233 - -
Vvi18g1369 332 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 332 IPR044790 -
Vvi18g1369 332 MobiDBLite consensus disorder prediction 66 99 - -
Vvi18g1369 332 Coils Coil 278 301 - -
Vvi18g1369 332 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 104 183 IPR035441 -
Vvi18g1369 332 CDD TFIIS_I 106 176 - -
Vvi18g1369 332 SMART TFS2_5 106 177 IPR003617 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1369 - - - vvi:100262291 671.774
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1369 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003587 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 2 1 4 3 2 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14281 PF08711 Med26 1.20E-13 No_clan Vvi TR