Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1370 ATGACTTTGGAGGATTTTCTGGCGAAGGCAGGGGCGGTGGAGGAAGAAGGGGAGGATCGGGACGTGAAGGTTCCCCTGGTGACGCAGCGGCTGAGCGGAGGGATTTTCGCTTTTGATCCCGTGCCGCCGAGTCCCATCACGCCGGCGCAGGTGGAGGGTTCGGTGATAGGGTTTGGGAATGGAATGGAGATTGTTGGGGGAAGAGGCAAGAGGAGGGCGCCTGTCTTGGAGCCCTTGGATAAGGCGGCTCAGCAGAAGCAGCGCCGGATGATCAAGAACAGAGAGTCTGCGGCCAGGTCGAGGGAGCGGAAGCAGGCATACCAAGTTGAATTAGAATCATCAGCAGTAAGACTGGAGGAGGAGAATGAGCAGCTATTGAAAGAGAAGGCTGAGCGTTCAAAAGAAAGGTTAAAGCAGCTCATGGAAAAAATTATCCCAGTTGTGGAAAGGAGGAAACCAGCCCGCGTCCTCCGAAGAGTTCGCTCCATGGAGTGGTAG 498 55.62 MTLEDFLAKAGAVEEEGEDRDVKVPLVTQRLSGGIFAFDPVPPSPITPAQVEGSVIGFGNGMEIVGGRGKRRAPVLEPLDKAAQQKQRRMIKNRESAARSRERKQAYQVELESSAVRLEEENEQLLKEKAERSKERLKQLMEKIIPVVERRKPARVLRRVRSMEW* 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19680341 19687518 + Vvi18g1370 Vvi18g1370 781073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1370 165 SUPERFAMILY Leucine zipper domain 85 136 IPR046347 GO:0003700|GO:0006355
Vvi18g1370 165 MobiDBLite consensus disorder prediction 82 103 - -
Vvi18g1370 165 Gene3D - 83 143 - -
Vvi18g1370 165 Pfam bZIP transcription factor 83 142 IPR004827 GO:0003700|GO:0006355
Vvi18g1370 165 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 88 103 IPR004827 GO:0003700|GO:0006355
Vvi18g1370 165 PANTHER BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR 1 164 - -
Vvi18g1370 165 CDD bZIP_plant_BZIP46 85 131 - -
Vvi18g1370 165 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 83 135 IPR004827 GO:0003700|GO:0006355
Vvi18g1370 165 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 1 164 IPR043452 GO:0003700|GO:0045893
Vvi18g1370 165 SMART brlzneu 81 143 IPR004827 GO:0003700|GO:0006355
Vvi18g1370 165 Coils Coil 104 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1370 K14432 ABF; ABA responsive element binding factor - vvi:100262305 310.457
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1370 Blo01g01730 . . Bda03g00393 Bpe02g00211 Bpe04g00355 Bma04g00371 Bma01g02509 Cmo04g02568 Cmo15g00598 . . Car01g00864 . . . . . . . . . . . . . . . . . . Cone4ag1498 Cone7ag1450 . . . . . . . . Bda11g00872 . . . . . . . . . . Car04g02360 Car15g00550 Cpe01g02120 . . . . . . . . . . . . . . . . . Chy03g00502 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003827 2 1 1 2 2 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 6 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14282 PF00170 bZIP_1 3.00E-12 CL0018 Vvi TF