Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1372 ATGGAGATTGAATTGGGACTCAGGGTTTCCAGACCCAGTCATGATGCCATCTCCGCCAGCCTTCGCATCACCAAAGATGGCCCCAATCCTCTTTTCCTGTATATGGAAACTGACGAGATGTTCATCCTCACTGCCAATCTCAAAGGATATCCGAGGGAGAAACTCAAGATTAGTATAGACGAAGTTGGGACTCAGATTGCTATTAGTGGGGAGAAGGTGATTACACAGATGATGACGGTGGGGTGGATAGCGCACAAGAGAGAGGTTGAGGTCAGGAGATTCAGAAAGGTTTTTCGGATTCCAGACGGGGTTGTTCTAGATGGAATCAACGCCAGTTTCAATGAAGAAGAATCGGTTTTGAAGATTTTAATGCCTAAATCGGTGAAAGGAATTAGTGGGGTTAAGATGGAGGAAGTGAAGGAAGAGGACATTGATGGAAGGAGCTATGAAAGGACTCGAGTTGTGGCTGATGAGGTTCCTGAAACAGAGAATCCTAGAGAGACTCTGAAAGAAGAGATAAACAATGTAACGGCAACTGATGAGGTTGAGGGAAGATTGTCCCAAGCTGCTGATACAGAGGAAGAGCCCACTCAGTTGAATGAAGGAGAGGTGCCATCATCCCAAGAAACTCCAGCCAAAGCCAGAAAGGATTCTGATTCAGAAGCAAAAAGTAGAGCAGCGGAGGAGAAATCAAAGGAGTGTGAACAGAGTCCAGAGGCAACTGAATCAACAAAAGTTGAACAAGATCAAGTGACTGAAGGAGCTCAGGTTGAAGAATATAATGCCCATGAGGAAAATGGTGGAGTTGAAACTCATCCATCACAACAACAGCCGAATGCAGAAATTCAAGAAGCGGCCCAGGATCAAACAGAGTCACTGAAGTCAGATCATCCTGAAGAAGTTGAAGGAATGGGAAATGAAATTCCAGCAGAAACTGATCGAGTAGACCCTCCTGAAGAAAAAGTTGACGACAGACAGGGCTCGTTGGCTCCTTCCAAAAAGTCTAAGCTATGTAGTCCATGTTTCTTTGCAGGATCTGCCATTGTTGTATCAATTATGGTGCTTGTTATTTGCTTAAATCGACCTAAAAGAAGATGA 1098 44.54 MEIELGLRVSRPSHDAISASLRITKDGPNPLFLYMETDEMFILTANLKGYPREKLKISIDEVGTQIAISGEKVITQMMTVGWIAHKREVEVRRFRKVFRIPDGVVLDGINASFNEEESVLKILMPKSVKGISGVKMEEVKEEDIDGRSYERTRVVADEVPETENPRETLKEEINNVTATDEVEGRLSQAADTEEEPTQLNEGEVPSSQETPAKARKDSDSEAKSRAAEEKSKECEQSPEATESTKVEQDQVTEGAQVEEYNAHEENGGVETHPSQQQPNAEIQEAAQDQTESLKSDHPEEVEGMGNEIPAETDRVDPPEEKVDDRQGSLAPSKKSKLCSPCFFAGSAIVVSIMVLVICLNRPKRR* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19691813 19692987 + Vvi18g1372 Vvi18g1372 781075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1372 365 CDD ACD_sHsps-like 36 126 - -
Vvi18g1372 365 SUPERFAMILY HSP20-like chaperones 29 128 IPR008978 -
Vvi18g1372 365 PANTHER HSP20-LIKE CHAPERONES SUPERFAMILY PROTEIN 1 364 - -
Vvi18g1372 365 Pfam Hsp20/alpha crystallin family 35 130 IPR002068 -
Vvi18g1372 365 MobiDBLite consensus disorder prediction 191 207 - -
Vvi18g1372 365 MobiDBLite consensus disorder prediction 157 335 - -
Vvi18g1372 365 MobiDBLite consensus disorder prediction 290 330 - -
Vvi18g1372 365 MobiDBLite consensus disorder prediction 268 289 - -
Vvi18g1372 365 Gene3D - 8 136 IPR008978 -
Vvi18g1372 365 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 22 142 IPR002068 -
Vvi18g1372 365 MobiDBLite consensus disorder prediction 210 242 - -
Vvi18g1372 365 MobiDBLite consensus disorder prediction 157 178 - -
Vvi18g1372 365 PANTHER HEAT SHOCK PROTEIN 26 1 364 IPR045045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1372 - - - vvi:104882680 704.131
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1500 Cone7ag1449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g00948 Cam09g0999 Cec09g1000 Cco09g1012 . . Cre09g0962 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008746 0 0 0 0 0 1 2 1 1 2 2 1 2 1 0 2 1 2 0 1 2 0 2 1 1 2 1 2 1 1 32