Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1374 ATGTTGGAAGCTAAGAGCCTGAGAAAAGCAGTGGTGGCACCATCTCTTCTGGAAAATCCCTCTGCTGCAAACCTTCAGTCTACTCGCCTCGCTCTTCATGTTGATGGCGGCGGTTCTTCTTGCAGGGTTTACATCGCCTCTGGATGCTCCATTTACAGTGTTCAGATATCAATGGAAGATTCTTTGGTCAACAAAGGAAAAGAAAGCCTCTTGATTCCTGTAAGCGCACAGGTTATGGACTCATCCTTAGTTAATCGGTGCCCTCATCGATCGGAAATTCAGAGTATAGTGCTTGCTGAAACTGAGAGTCCTGACTGCTTAATTTTGGGAAGCGTGGATTCTTATGGTCATCTTATTGTATCTCAATTGGATCCTAGTAGTAAAGATGTTAACAGGGTTACACTTTCAGTATTGCCTCGGGATTGTGGTGTTGGAGAGGGTAGTTGGGCAGGGCTCTGCTTCAGTCCAAGTCAATGGTCCATGGCTGCTGTAGCACGTAGCTTCTGTAAAAGCATTGATGTCTATGACCAAGATATTCATCTTCGGACTCTACGTACGTTGTGGTATCCATCTTCATTGGACTTTATGCAAAACTTAAGTAATGGGAATGAAAGATCTATATTAGCTGTCACTGAAGGCTGTCAGCTGACAATATGGGACTTAAGAATGAAAGAGAATGGCGGTTGTGTGCATCGAATTTGTGGTCCCCTTGGAGATATCTTCTATGCTGTCACTAGTTCTTCAACTGGTAGTATTGCAGTGGGTGGTGCTGACCGTACTGTTACCATCTATGATCCTCGCAGATGGTCAGCATTATCAAGATGGGTGCATTGCTCAAAATATGAGATAACTGGACTTGCTTTCTCATCAAGTGACCCTGATTACATCTACATACAAGGGGTTGATTATGAGGTCTTTTGTGGACAATGGAATGAAAATAAGAAGGTATTTTCATTTAGAGGAGATTCAAACTGGCTTGGATTCAGTAAGTGCCCCAACAGAGATGTCTTAGGTGGGTGGTGCGATTCAGGTAGCATCTTTGTGGCTGATGTTGAAGCAAAGGAGAACAAAGGGACTCATGAAGTCACCGGCTTGGAGGTGGAGCTGGAGGCGTTTCAGAGGCAGGTAGCCGACCGGTTTCTGCAGGTGTCTTCGGGGTCGTCGGAGCTTCTGTCGTTGTCCTGGGTCAGGAAGCTTCTGGATGTGTTCCTCTGCTGTCAGGAGGAATTTAGGGTTATTTTGTTCAATAACAAAGCGACTTCTGGAGATTGTGCCGTGCGCTTTAGACAACCAGAGGAGTCTCGGGGAGGGCCAATTCCGCCGCGCCAAGAAGGCCTTGATCGATTTGGCGATCGCGTTTCCCGGTCGTGGTCTGCGGCGAGGCAGCTTCAGGCGATTGGGAACAACTTGGCAGCGCCGAGGGCGAATGAGATTGTTGCCTCTCGAGGACTCGCGGTGGCAGTTTTCACAATGAGCTCGGTTTTTTGGGCGGCTCCGATGCAATCACTGCATGATCGGATTATTGAGGAGTCCCGGAGAAGGGACCGGAGGAATGCTTGTGGGCTGTTGAAGGAGATTCATCAGATTGAGAAATGCACCCGACACATGAATGAATTGGCAGACTCAGTTCAATTCCCATTAACGGAGGAAAGGGAGGCTGAGGTGAGACAGAGAGTGCAGGAGCTGGGGCAGGTGTGCCAAACTATAAAGGCAGGATTGGACCCCTTGGAGCGCCAAGTGAGGGAAGTGTTCCATAGGATTGTGCGCAGCCGAACTGAGGGTCTGGACACCTTGGGAAGGGCTAACAATGAGAAGACTGAAAGAAAAATGAGATGA 1836 48.04 MLEAKSLRKAVVAPSLLENPSAANLQSTRLALHVDGGGSSCRVYIASGCSIYSVQISMEDSLVNKGKESLLIPVSAQVMDSSLVNRCPHRSEIQSIVLAETESPDCLILGSVDSYGHLIVSQLDPSSKDVNRVTLSVLPRDCGVGEGSWAGLCFSPSQWSMAAVARSFCKSIDVYDQDIHLRTLRTLWYPSSLDFMQNLSNGNERSILAVTEGCQLTIWDLRMKENGGCVHRICGPLGDIFYAVTSSSTGSIAVGGADRTVTIYDPRRWSALSRWVHCSKYEITGLAFSSSDPDYIYIQGVDYEVFCGQWNENKKVFSFRGDSNWLGFSKCPNRDVLGGWCDSGSIFVADVEAKENKGTHEVTGLEVELEAFQRQVADRFLQVSSGSSELLSLSWVRKLLDVFLCCQEEFRVILFNNKATSGDCAVRFRQPEESRGGPIPPRQEGLDRFGDRVSRSWSAARQLQAIGNNLAAPRANEIVASRGLAVAVFTMSSVFWAAPMQSLHDRIIEESRRRDRRNACGLLKEIHQIEKCTRHMNELADSVQFPLTEEREAEVRQRVQELGQVCQTIKAGLDPLERQVREVFHRIVRSRTEGLDTLGRANNEKTERKMR* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19720788 19740328 - Vvi18g1374 Vvi18g1374 781077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1374 611 PANTHER OS01G0867200 PROTEIN 2 355 - -
Vvi18g1374 611 SUPERFAMILY WD40 repeat-like 91 361 IPR036322 GO:0005515
Vvi18g1374 611 Pfam Protein ROH1-like 452 494 IPR008511 -
Vvi18g1374 611 Pfam Protein ROH1-like 496 598 IPR008511 -
Vvi18g1374 611 Pfam Protein ROH1-like 356 420 IPR008511 -
Vvi18g1374 611 Gene3D - 49 326 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1374 - - - vvi:100252073 730.324
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1374 Blo01g01729 Blo12g00785 . Bda03g00392 Bpe02g00212 Bpe04g00354 Bma04g00370 Bma01g02508 . . . . . . . Cpe06g00909 . . . . . . . . . . . . . . . . . Cone17ag0783 . . . . . . . Bda11g00873 . . . . . . . . . . . . . . Bhi09g01534 . . . . Mch11g1487 . . . . . . . . . . . Cme01g00793
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009025 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 32