Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1375 ATGCTGAAGTTGAATGATCAAGAATTCCTTGGAGAATGCAGTTGTGTTCTGTCAGAGATATTGACTAAACAAGGCCAGAACTTAACCCTAGATTTTCATAACATAAATGGGAACAGGGGTTTGAAAAACCTAGGAAAACTCACTGTCCATGCAGAGGAAACAATTGCTTCAAGGAATGCTATTGATGTTATATTCCATTGTTCACATTTGGAAAACAAAAACTTGTTTTCTAAAAGTGACCATTTTCTAAGAATATCTAGGATTGTTGAACATGGAGGTTCTGTTTCAATTTGCAAGACAGAAGTGGTTGATAACAACTTGAATCCAATATGGAGGCCTCTACGTCTAACAATGAATCAATTTGTTAGCAAGGATAACCCATTAGTTATCGAGTGCTTTCATTTCAATACTAGTGGGAATCATGTACTGATCGGTGAACTTCAGAAATCAGTGGCAGACCTGGAAAAACTTCATAAAAAAAAAACAAAAAAAAAACTAGTGCCAGTTTCATCTTACCCTCTTCTGTTCAGCATACTATACAGTTTTATTGATTATGTTTCTATGCAAGTGGTCTGTAAATATTTTGTTTTGCTTATCATAACGGATGGAGTGCTTACAGATCTCCAAGACACAAAAGATGCTTTGGTCAGGGCATCTGATTTGCCTTTATCGATTCTGATAATGGCCGTCACATACAGCCACGCACTAAGAGATGATTTTCTGAAACACGCACAACAGGCACGCATTCGGGATGGTATCAACGACACGAGATAG 774 37.34 MLKLNDQEFLGECSCVLSEILTKQGQNLTLDFHNINGNRGLKNLGKLTVHAEETIASRNAIDVIFHCSHLENKNLFSKSDHFLRISRIVEHGGSVSICKTEVVDNNLNPIWRPLRLTMNQFVSKDNPLVIECFHFNTSGNHVLIGELQKSVADLEKLHKKKTKKKLVPVSSYPLLFSILYSFIDYVSMQVVCKYFVLLIITDGVLTDLQDTKDALVRASDLPLSILIMAVTYSHALRDDFLKHAQQARIRDGINDTR* 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19750075 19751858 + Vvi18g1375 Vvi18g1375 781078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1375 257 CDD C2B_Copine 61 153 IPR037768 -
Vvi18g1375 257 Gene3D C2 domain 63 174 IPR035892 -
Vvi18g1375 257 Coils Coil 144 164 - -
Vvi18g1375 257 PANTHER COPINE 1 188 IPR045052 GO:0005544
Vvi18g1375 257 PANTHER COPINE 191 232 IPR045052 GO:0005544
Vvi18g1375 257 SMART C2_3c 64 163 IPR000008 -
Vvi18g1375 257 PANTHER PROTEIN BONZAI 3 191 232 IPR031116 GO:0005544|GO:0060548
Vvi18g1375 257 PANTHER PROTEIN BONZAI 3 1 188 IPR031116 GO:0005544|GO:0060548
Vvi18g1375 257 ProSiteProfiles C2 domain profile. 43 167 IPR000008 -
Vvi18g1375 257 Pfam C2 domain 64 160 IPR000008 -
Vvi18g1375 257 Pfam Copine 182 230 IPR010734 -
Vvi18g1375 257 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 64 157 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1375 - - - vvi:100250185 283.878
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1375 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83