Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1377 ATGGGTTTGGGAGCTTATCAAGGCGGAGTTTTGATTCGTTGGGCTGGCCTTCCACCTGAGCTACTTCGTGATGTGATTAAGAGAGAAATGTGTAAAGAAATTGTCAAAAGTCCAGAGTTCTCTGGGAAGCTTACTTTCCCCATCTCTCTGAAACAGCCAGGGCCTCGGGATGGAACCATTCAGTGCTTCATTAAGAGGGACAAGTCCAACTTGACTTACCACCTTTTCCTTTGCCTTAGCCCTGCTTTGCTTGTTGAAAATGGGAAATTTCTTCTGTCTGCAAAACGAAACAGGAGAACTACTTGCACAGAATATGTAATCTCCATGGATGCCGATAACATATCAAGATCAAGCAGCACTTATATTGGGAAGCTGAGGTCAAATTTCCTTGGCACAAAGTTCATAATTTATGATACACAGCCACCATACAATGGTTCTCAACTCTCCCCACCTGGCCGAACGAGCCGGAGGTTCTACTCGAAAAAGGTTTCTCCTAAAGTCCCAACTGGCAGCTACAACATTGCCCAGCTCCTCCCTCGCAACCTTGAAGATTCGTTCCAGGATGAGGGAAAGGACAGACCACTGGTTCTCCGAAACAAGCCGCCCAGATGGCATGAGCAGCTGCAATGTTGGTGCCTTAACTTCCGGGGGAGGGTAACTGTTGCCTCAGTCAAGAATTTCCAGCTGATTGCTGCCACACAGCCGGCCGCTGCCTCTGATCATGACAAGATTATTCTGCAGTTTGGCAAAGTTGGCAAGGATATGTTTACCATGGATTATCGATATCCTCTGTCTGCTTTTCAGGCTTTCGCTATCTGCTTGAGCAGCTTCGACACTAAGTTGGCATGTGAATAG 855 47.02 MGLGAYQGGVLIRWAGLPPELLRDVIKREMCKEIVKSPEFSGKLTFPISLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRNRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNGSQLSPPGRTSRRFYSKKVSPKVPTGSYNIAQLLPRNLEDSFQDEGKDRPLVLRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAASDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19866885 19871844 - Vvi18g1377 Vvi18g1377 781080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1377 284 PRINTS Tubby superfamily signature 105 121 IPR000007 -
Vvi18g1377 284 PRINTS Tubby superfamily signature 121 145 IPR000007 -
Vvi18g1377 284 PRINTS Tubby superfamily signature 197 214 IPR000007 -
Vvi18g1377 284 PRINTS Tubby superfamily signature 215 231 IPR000007 -
Vvi18g1377 284 PRINTS Tubby superfamily signature 241 260 IPR000007 -
Vvi18g1377 284 PRINTS Tubby superfamily signature 262 284 IPR000007 -
Vvi18g1377 284 Gene3D Tubby Protein; Chain A 47 284 IPR025659 -
Vvi18g1377 284 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 28 177 - -
Vvi18g1377 284 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 186 284 - -
Vvi18g1377 284 ProSitePatterns Tub family signature 1. 215 228 IPR018066 -
Vvi18g1377 284 Pfam Tub family 50 176 IPR000007 -
Vvi18g1377 284 Pfam Tub family 184 279 IPR000007 -
Vvi18g1377 284 ProSitePatterns Tub family signature 2. 269 284 IPR018066 -
Vvi18g1377 284 PANTHER TUBBY-RELATED 28 177 - -
Vvi18g1377 284 PANTHER TUBBY-RELATED 186 284 - -
Vvi18g1377 284 SUPERFAMILY Tubby C-terminal domain-like 38 284 IPR025659 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14283 PF01167 Tub 2.10E-45 CL0395 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1377 K19600 - vvi:100246937 500.745