Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g138 ATGGCGATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATGGCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTAGGGCCAAAGGGAATGGATAAAATTTTGCAATCAACAGGCAGAGGCCGCAGTGTTACTGTTACAAATGATGGTGCTACCATCTTAAAGTCCCTTCATATTGACAACCCAGCTGCTAAAGTCCTTGTTGATATATCCAAAGTTCAAGATGATGAGGTTGGTGATGGGACCACTTCAGTTGTTGTTTTGGCTGGAGAGCTTTTAAGAGAAGCAGAGAAGTTGGTGGCAGCAAAAATTCATCCCATGACAATAATTTCAGGTTATCGGATGGCTGCCGAATGTGCTCGGAATGCTTTGTTACAGAAAGTCATGGATAATAAAGAGGATGCAGAAAAGTTCAAGTTAGACTTGATGAAGATTGCAATGACTACTTTGAGTTCAAAAATTCTTTCCCAGGACAAGGAACATTTTGCAAAACTGGCAGTAGATGCTGTTATGAGACTGAAGGGCAGCACAAACTTGGAGTCTATTCAAATTATTAAGAAGCCTGGAGGATCACTCAAAGACTCATTTTTGGATGAAGGGTTTATTCTTGACAAGAAGATAGGCATTGGTCAACCAAAACGCATAGAGAATGCAAAGATTTTGGTGGCAAATACTGCAATGGACACCGATAAAGTCAAGATTTATGGGGCACGTGTCCGTGTTGACTCAATGTCTAGGGTTGCCCAGATTGAAGGGGCTGAAAAGGAGAAAATGAGAGAAAAAGTTCAGAAGATTATAGGTCATGGGATTAACTGCTTTGTTAACAGACAGTTGATTTACAATTTCCCAGAGGAACTCTTTGCAGATGCGGGAGTACTTGCAATTGAGCATGCTGATTTTGATGGTATTGAACGTCTGGCTCTAGTAACTGGTGGTGAGATTGCATCAACCTTTGACAATCCAGAGTCGGTTAAGCTTGGGCACTGCAAGCTGATAGAAGAAATTATGATTGGTGAGGACAAATTGATCCATTTTTCGGGTGTTGAAATGGGTCAGGCATGCACAATAGTATTGAGAGGTGCAAGCTTTCATGTGTTGGATGAGGCAGAAAGGTCTCTGCATGATGCCTTGTGTGTGCTTTCTCAGACAGTGATTGACAGCCGAGTTTTGCTTGGAGGTGGTTGGCCTGAGATGGTGATGGCAAAGGAAGTGGATGAGCTGGCCCGGAAAACTCCTGGGAAAAAATCTCATGCTATTGAAGCTTTTTCACGGGCACTCATATCCATTCCAACAACCATTGCAGACAATGCAGGGCTGGATAGTGCTGAGTTGATAGCACAGCTCCGTGCAGAGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAGGCTGTATTACTCTCTGCCACTGAGGCTGCTGAGATGATTCTTAGAGTTGATGAAATTATAACTTGTGCCCCACGGAGAAGAGAAGATAGAATGTGA 1584 43.5 MAIDNLFKDDATEEKGERARMASFIGAMAIADLVKTTLGPKGMDKILQSTGRGRSVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGYRMAAECARNALLQKVMDNKEDAEKFKLDLMKIAMTTLSSKILSQDKEHFAKLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSRVAQIEGAEKEKMREKVQKIIGHGINCFVNRQLIYNFPEELFADAGVLAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASFHVLDEAERSLHDALCVLSQTVIDSRVLLGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALISIPTTIADNAGLDSAELIAQLRAEHHKEESHAGIDVISGSVGDMAELGISEAFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1357799 1364583 - Vvi18g138 Vvi18g138 779841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g138 527 Gene3D - 142 399 IPR027410 -
Vvi18g138 527 ProSitePatterns Chaperonins TCP-1 signature 2. 58 74 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi18g138 527 SUPERFAMILY GroEL equatorial domain-like 13 519 IPR027413 -
Vvi18g138 527 PANTHER CHAPERONIN 5 525 IPR017998 GO:0140662
Vvi18g138 527 PANTHER BNAA02G05110D PROTEIN 5 525 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Vvi18g138 527 Gene3D GroEL 211 363 IPR027409 -
Vvi18g138 527 SUPERFAMILY GroEL apical domain-like 206 372 IPR027409 -
Vvi18g138 527 ProSitePatterns Chaperonins TCP-1 signature 1. 35 47 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi18g138 527 ProSitePatterns Chaperonins TCP-1 signature 3. 86 94 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi18g138 527 CDD TCP1_beta 7 522 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Vvi18g138 527 Pfam TCP-1/cpn60 chaperonin family 30 517 IPR002423 GO:0005524
Vvi18g138 527 Gene3D - 27 516 IPR027413 -
Vvi18g138 527 SUPERFAMILY GroEL-intermediate domain like 154 399 IPR027410 -
Vvi18g138 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 32 48 IPR017998 GO:0140662
Vvi18g138 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 56 74 IPR017998 GO:0140662
Vvi18g138 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 86 105 IPR017998 GO:0140662
Vvi18g138 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 367 389 IPR017998 GO:0140662
Vvi18g138 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 401 413 IPR017998 GO:0140662
Vvi18g138 527 TIGRFAM chap_CCT_beta: T-complex protein 1, beta subunit 5 523 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g138 K09494 CCT2; T-complex protein 1 subunit beta - vvi:100257518 1012.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g138 Blo01g01618 . . . Bpe02g00326 . . Bma01g02393 . . Cma01g01996 . Car01g01568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00955 . . . . . . Cmo01g02057 . . . . . . Cpe02g00049 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005792 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 3 1 1 2 1 1 39