Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1381 ATGGATGTTACTTTTCGTGACTCAAGTCTCAAAGGCCCATTATGGGAAGAGGTTTCCAGGAAACTGGCGGAGCTTGGCTATCATCGAAGCGCCAAGAAATGCAAGGAAAAATTCGAGAACGTCTTCAAGTACCACAGGAGAACCAAAGAAGGCCGAGCCTCCAAGGCCGACGGCAAAACTTATCGGTTTTTCGATCAGTTGGAAGCTTTGGAAACTCAACCCTCACTTGCCTCCCTCCCCCACTCTAAACCTCCAGCTCCGGCAGTGCTTGCCGCCACAATGCCGCTGGCTAACCTTCCAACCACTCTCCCTGAAATCACTGTTCCATCAACATTACCCAACCCTACAAATTCCACAGCAAACCCTACAATTCCCACCATCCCTTCCCCGACGCCACCCACGAGCCGGCATCCTCCACACAACAATGTTCCCACCGCCCATCCAGCCATGGCCGCCAATTTCCTCTCCAATTCCACCTCTTCCTCAACCTCCTCCGACGAAGAATTGGAGAGACGGGGTAAGAGAAAGAGGAAGTGGAAGGCCTTCTTCCAGAGGCTAATGAAGGATGTGATCGAGAGGCAAGAGGAGCTGCAGAAGAGATTCTTGGAAGCCATAGAGAAGCGAGAGCACGACCGAATGGTCCGTGAAGAAGCTTGGAAAATGCAGGAAATGGCGAGAATGAATAGAGAGCACGAGCTTTTAGTCCAGGAGAGATCAATAGCCGCCGCCAAAGACGCAGCGGTCATTGCATTCCTGCAGAAAATATCCGAGCAGCAAAACCCGGTTTTGGAACCGAGGAAGATGGACAACGGAGGAGGAGCCGAGAATTTAGTTCCAACAAGCTCATCCCGATGGCCGAAAGCCGAAGTCCAAGCCCTGATTCGGCTCCGAACCAGCTTGGATGTCAAGTATCAGGAAAACGGACCCAAAGGGCCCTTATGGGAGGAGATCTCGGCGGGCATGAGAAAGCTGGGATACAACCGGAACGCCAAAAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGAAAAGACCAGAAGATTCCAAGACGTGTCCATATTTCCACCAGCTTGAAGCGCTGTACAAAGAGAAGAACAAGATGGAGATAAACTCATTCAATCCCAGTTACCCCCTCTTGAAACCCGAAAACCCTATGGTCCCCATAATGGTGCAGCCAGAGCAACAATGGCCTCTACACCCCGAGATGAACAGATCGGAATCGGGAATGGAGGACATGGAAAGCGAAAACAACATGGAGCAGAACCAGGAGGACGACGAAGACGACGGAGAAGAAGAGCAAGAAGGAGATGAGGACGACGAAGATGATGGAGGTGGCTATGAGATAAGAGTTTGGCACTTGACTGGGAGAGCTGTGGCAAATGGCAATGGAAGTGGGTCAGATCGCAGAAGTTGTCGGAGAGAGGATGAGTGGGTCAGATTCCGGCTGGCAAGATGGGGTTGCAGCAAAAACTTCAAAAAAAAAAATTTATACTTCAGGGAGGAGGATGGAAAAAAAAACAAACACATGGGTTGTAGCCTATATAATGGCCTAATGGGTGAGGGGGCTGAAATGGGGGAGATGAAAGAACCATAA 1623 50.03 MDVTFRDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVFKYHRRTKEGRASKADGKTYRFFDQLEALETQPSLASLPHSKPPAPAVLAATMPLANLPTTLPEITVPSTLPNPTNSTANPTIPTIPSPTPPTSRHPPHNNVPTAHPAMAANFLSNSTSSSTSSDEELERRGKRKRKWKAFFQRLMKDVIERQEELQKRFLEAIEKREHDRMVREEAWKMQEMARMNREHELLVQERSIAAAKDAAVIAFLQKISEQQNPVLEPRKMDNGGGAENLVPTSSSRWPKAEVQALIRLRTSLDVKYQENGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYKEKNKMEINSFNPSYPLLKPENPMVPIMVQPEQQWPLHPEMNRSESGMEDMESENNMEQNQEDDEDDGEEEQEGDEDDEDDGGGYEIRVWHLTGRAVANGNGSGSDRRSCRREDEWVRFRLARWGCSKNFKKKNLYFREEDGKKNKHMGCSLYNGLMGEGAEMGEMKEP* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19897546 19900584 - Vvi18g1381 Vvi18g1381 781084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1381 540 MobiDBLite consensus disorder prediction 125 139 - -
Vvi18g1381 540 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 263 461 - -
Vvi18g1381 540 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 262 - -
Vvi18g1381 540 PANTHER - 263 461 - -
Vvi18g1381 540 PANTHER - 1 262 - -
Vvi18g1381 540 CDD GT1 283 348 - -
Vvi18g1381 540 MobiDBLite consensus disorder prediction 422 454 - -
Vvi18g1381 540 Pfam Myb/SANT-like DNA-binding domain 283 370 IPR044822 -
Vvi18g1381 540 Pfam Myb/SANT-like DNA-binding domain 4 70 IPR044822 -
Vvi18g1381 540 Gene3D - 285 346 - -
Vvi18g1381 540 Gene3D - 1 47 - -
Vvi18g1381 540 MobiDBLite consensus disorder prediction 107 175 - -
Vvi18g1381 540 MobiDBLite consensus disorder prediction 409 455 - -
Vvi18g1381 540 CDD GT1 1 49 - -
Vvi18g1381 540 MobiDBLite consensus disorder prediction 107 124 - -
Vvi18g1381 540 Coils Coil 412 432 - -
Vvi18g1381 540 SMART sant 281 343 IPR001005 -
Vvi18g1381 540 ProSiteProfiles Myb-like domain profile. 283 341 IPR001005 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14284 PF13837 Myb_DNA-bind_4 6.50E-22 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1381 - - vvi:100241901 748.043