Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1387 ATGGCGGATCAAGAGGAGGAGGACCTGCGGATGGCGCTGCGGATGAGTATGCAGCAGTGGCCGCCGGAGCCGAAGCGGAGCAAGCCGAGGGAGAGCGGGGGGGCTCCCACCGGGTCGCCGGATGATTCGCCGGAGGCAAAGAGTAGGCGGTTGCAGAGGGAGCTTATGGCTGCCGCGGCGGAGAAGCGACTGATGATGTCTGGGAAGCCCGCGTCTCCGGCGCGGAGAAATGTGGCATTTCCAAAGGAAGAAAAGGATGGGGTTGCCGGAGGTGCGGGAGGTGATGGGCGGAAGGAGGTGAGTTGTGGAATGGAGCTATCCGATGCCGATGTAAATCAGTTGTTCTCTATGGTCTTTGGTAATGATGTTTCGAAGGGGATTCTCGCGCAGTGGTGTAATCAGGGAATTAGGTTTAGCCCTGATCCAGAAACATTTATGGGCCTAGTACAACATGAAGGCGGGCCATGTGGTGTCTTAGCTGCCATACAAGCCTTTGTTCTGAAGTACCTTATTTTCTTTCCGGATGATTTAGGAAAAGTTGAACCAAACATGCCAGAAAATGTAGATTCAAGGAGATTTTCTAAAAGTGAATCTGTTACATCGAATATGTTTTCTTCTCTTACCGAAGATGGAAAAGCAAGAGCCTTGGTCAGGAGCATGGGTGAGATACTGTTTTTATGTGGAAGTAATAAAAGGGCTGTGATTGCAACCTTGAGCATTCTCGTGCATGATGCTGAGGGGTCTGACAGTCTAAAGGATGATATCATGACAAAAGCACTTGAAGGTGTTTCTATAGAATCAGCTTCTGATTTGCAGACAATTTTAAGAGTTAATACCTATACTTCAATTGCAAATGCATACAAGAGGCTCGAAGCGATGATTCCTGTTTTCCAAAGTCGTATGGGGGCACTGCTATTCCTTATTTCTGCTTTACTCTCTCGAGGATTGGACTCCATTCAAGCTGACAGAGACGATCCGAACCCACCTCTAGTGACTGCTCCATTTGGCCATGCCTCACAGGAAATTGTAAACTTACTGCTATGCGGGCAGGCTGTCCCTAATGTGTTTGATGGAAGGATGGATTTAGGTGGGGGCATGTCTTTGAAGGGAATATCCACATGTGTGGAAGTTGGATTCCTTACTTTGCTAGAATCCCTGAATTTCTGTAAGGTTGGGCAGTTTCTGAAATGCCCAAAATGGCCAATATGGGTTGTTGGGAGTGAGTCTCATTATACAGTCCTATTTGCTCTTGATACCACTGTTCAAGATGAGAATGAACTGGAAGAAAGAGAGTCACAGATCAGGAAGGCATTTGATGCGCAAGATCAGAGTGGAGGAGGTGGCTTCATCAGTGTGGAAGGGTTCCATCAAGTCCTCAGAGAAACAGGCATTGACCTTCCACCTGAGAAGCTAGATCACCTCTGTGGGGCTGGGTTTATTGTATGGAGTGAGTTCTGGCAGGTTCTTCTGGATTTAGACAAGAGATTTGGAGGCTTAAAAGATCCTACTGGATCAATGGGTAAGAAGGTCTTTGATCTTTACCATTTTAATGGGATTGCAAAATCGGTCTTGAATGGGAGTCCAGCAGCTTCAGGAAGTGAGATGCCAATTCAAAGACCTAGACTTACAAAATTGAGGGTTTCAGTTCCCCCAAGATGGACTCCTGAGGAGTTTATGGCAGATGTTGTATTGCCCTCTGCTTCAGGTGGGAATGACCCAAGTGCAAAAGAAACGGTTATTGAAGTGGCTAAACCAGAGCCTGCTCAACATGCACCATTGGTGGACTGCATTAGAACGCGCTGGCCAAGGGCTGTTTGCAACTGGGTGGGGGATCCCCCTAGCATAGTCTGA 1851 47.76 MADQEEEDLRMALRMSMQQWPPEPKRSKPRESGGAPTGSPDDSPEAKSRRLQRELMAAAAEKRLMMSGKPASPARRNVAFPKEEKDGVAGGAGGDGRKEVSCGMELSDADVNQLFSMVFGNDVSKGILAQWCNQGIRFSPDPETFMGLVQHEGGPCGVLAAIQAFVLKYLIFFPDDLGKVEPNMPENVDSRRFSKSESVTSNMFSSLTEDGKARALVRSMGEILFLCGSNKRAVIATLSILVHDAEGSDSLKDDIMTKALEGVSIESASDLQTILRVNTYTSIANAYKRLEAMIPVFQSRMGALLFLISALLSRGLDSIQADRDDPNPPLVTAPFGHASQEIVNLLLCGQAVPNVFDGRMDLGGGMSLKGISTCVEVGFLTLLESLNFCKVGQFLKCPKWPIWVVGSESHYTVLFALDTTVQDENELEERESQIRKAFDAQDQSGGGGFISVEGFHQVLRETGIDLPPEKLDHLCGAGFIVWSEFWQVLLDLDKRFGGLKDPTGSMGKKVFDLYHFNGIAKSVLNGSPAASGSEMPIQRPRLTKLRVSVPPRWTPEEFMADVVLPSASGGNDPSAKETVIEVAKPEPAQHAPLVDCIRTRWPRAVCNWVGDPPSIV* 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20094187 20140310 + Vvi18g1387 Vvi18g1387 781090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1387 616 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 4 18 IPR003903 -
Vvi18g1387 616 MobiDBLite consensus disorder prediction 67 96 - -
Vvi18g1387 616 MobiDBLite consensus disorder prediction 1 52 - -
Vvi18g1387 616 Pfam Deubiquitinating enzyme MINDY-3/4, conserved domain 117 428 IPR025257 -
Vvi18g1387 616 SMART DUF4205_3 115 491 IPR025257 -
Vvi18g1387 616 PANTHER UNCHARACTERIZED 2 615 IPR039785 GO:0004843|GO:0071108|GO:1990380
Vvi18g1387 616 SUPERFAMILY EF-hand 428 490 IPR011992 -
Vvi18g1387 616 Gene3D - 410 495 - -
Vvi18g1387 616 MobiDBLite consensus disorder prediction 78 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1387 K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4 [EC:3.4.19.12] - vvi:100258904 1220.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1516 Cone7ag1436 . . . . . . . . . Bda13g01412 . . . . Sed07g2864 Cmo01g01047 . . . . . . . Bhi09g01470 Tan01g3339 Cmetu01g1740 . . Mch11g1397 . Cla09g00900 Cam09g0952 Cec09g0956 Cco09g0958 . . Cre09g0922 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006024 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 2 1 1 3 1 1 38