Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1389 ATGGCCAGAACCAAGCAGACTGCTCGGAAGTCCACCGGAGGCAAAGCCCCTAGGAAGCAGTTGGCCACGAAGGCCGCCAGGAAGTCGGCTCCTGCCACCGGAGGAGTCAAGAAGCCTCACCGCTTCAGGCCTGGAACGATCGCCCAGGACTTCAAGACCGATCTGAGGTTCCAGAGCAGCGCCGTGGCGGCATTGCAGGAGGCTGCCGAGGCCTACTTGGTGGGGCTGTTCGAGGACACCAATCTCTGCGCGATTCACGCCAAGAGGGTCACCATCATGCCCAAAGATATTCAGCTAGCGAGGAGGATCAGGGGCGAGAGGGCTTGA 327 61.16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA* 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20145937 20146577 - Vvi18g1389 Vvi18g1389 781092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1389 108 PANTHER HISTONE H3 47 108 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi18g1389 108 PANTHER HISTONE H3 1 48 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi18g1389 108 SUPERFAMILY Histone-fold 2 105 IPR009072 GO:0046982
Vvi18g1389 108 Gene3D Histone, subunit A 2 47 IPR009072 GO:0046982
Vvi18g1389 108 Gene3D Histone, subunit A 48 108 IPR009072 GO:0046982
Vvi18g1389 108 ProSitePatterns Histone H3 signature 1. 15 21 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi18g1389 108 PANTHER - 47 108 - -
Vvi18g1389 108 PANTHER - 1 48 - -
Vvi18g1389 108 SMART h35 8 108 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi18g1389 108 MobiDBLite consensus disorder prediction 1 44 - -
Vvi18g1389 108 PRINTS Histone H3 signature 3 17 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi18g1389 108 PRINTS Histone H3 signature 17 31 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi18g1389 108 PRINTS Histone H3 signature 34 55 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi18g1389 108 Pfam Core histone H2A/H2B/H3/H4 47 104 IPR007125 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1389 K11253 H3; histone H3 - mbr:MONBRDRAFT_21514 189.119
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1389 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00733 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000133 8 11 8 7 8 7 11 7 5 4 6 7 6 5 6 10 7 12 7 7 6 8 7 7 6 4 7 9 7 5 215