Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1391 ATGGCTGATGAAAATGAGAAGAAAATCCCTGTATTCACAGTCCTGAAGAACAACGCCATTCTCAAGAACATCTTCGTGATCGACCAACCACCGCCGGGGATCTCCGAACCGGAAAGACCAGAGCACGTATTGGAAGAGATCTTGATGGTTGGAAGACACCCAGATTGCAACATCATGTTGACACATCCAAGCATCAGCAGATTCCACCTTCAAATATATTCAAACCCCACGTTGCAGAAGCTCTCTGTGATGGATTTATCATCTGTACATGGGACTTGGGTTTCGGAGAAGAAGATCCAACCGCGTGCTCGAGTTGAACTTAAAGAGGGCGATATAATAAGGTTGGGCAGCTCTAGCAGGATCTATAGGCTGCATTGGGTTCCTTTGAGCCAGGCCTATGATTTAGAAAACCCATTTGTGTCAGCGTCCGATGTGTTGATGGAAGAAGAGAAAGAAGATGAAATTTATCAGGATGTGAGTTCATTTTCTGTTGACAGTAAGGAAATTCAATCACAGCATCCAGTTCTGAAGGGCATGGAATCTGTCTTTTCTGATGAGAATTGTGAACCATTTGTGGAGAAACCAATTCCATCTGCACCTCCAGAGCCGGAAAACATGAATTCTTCAGCTTCTGATGAAGAAAAAACAGAAGGAGAAGGTCTTCCAGTAGTTGAGGCATTTGAAGAGATAGAAAATCAAAGTCCATCAAGAAGAGATTATGAACAGACGGAGATACTGGGTGCTGTGAATTTGTTGCCTTCTGCAGAGGTTCTCTTGGAGACAAGAAATGAACAATTGGATGAAGAAATCAAGAGCCCACAACCTCTTTTTGTCTCAGAGGTATTTTCTCAAGGAGAAACTCCAGTGGGTCTCCCAACAAAATCCTGGCAAAAATCTAAGTTGCTTGGAAGTCTGGATTCGTATGTTGCTGATGATAAAATAGAAATCCCATTGGTAGCTGAAGTTCTTGAAGAAGTGGAAAACCAGAGCCCTCCAAGAAAAGGCTATGAACAGAGAGAAGCCTCAGGCCTCCACTCCGGAGCTATCACAACTGAATCTGTCAATTCGTCTGTCCCAGACAGGAATATTCTCTCTGATATTGGGAATCAACAATTTTCCAATGAAAACCAGCCCCCTAAACCTCTTCCTGTGACCCTTGGACTGTCTGATGATGAAAATCCAGAAAGTCCTCCAGTAAGATTGGAGCAAAAATCTAGTTTACCTAACATATGGTCAAGAAGAGGTAAGCCTGCTAGTGTTCTTCAGATTCAAACAGGCAGGAGCACAAGAAAGTGCATTGGTGATGGTAATGGTGCTAAAATTAGAAAGCCAAAGCAGGAGGATTTGGAAAATAAACCAATTTCAAGGGCTCTTTTCCCTATGTTAGATGGGGAAGAGACAGAAATTTTTACTCCTAACAAAGAGAATTTTTCACCAAATACCCTTCTGCTGAAGTCTGTGAATAAGAAGAAGGGCATTCTAGAAGAAACTAAACAGTCCACATTGTGCAGATCATCATCTTCAAAGTTTTCCACTGGCCCCAACAAATGTTCAGAAGAAGATACGTCCACCTTTTCAGACAAAGAGAATCAGACACCTCAAGTTCTCCAAACACGAAAATCAGTAAGGCCCTCACCTGAAAATAGCTCTAGAAATCGTGGAAAGTTGGAAAAGGAGATTATGGTAATGAAGAGAGGAGCAGAAAGGGTACCATTTCATTCTCTGCTTGAGAATGCTGCTTGCAAAAGCAAGTCAGAAGTTTCAATCCTTGGTGCTAAAACTAGAAGCAGCAATTCTGTCAACTGTACTGGAACCACAGGGAATGCCACCAACTCTTCTTTTAACAATTCTGCTGGAGAGGGAAAGAGAAGGTGGAACATGGTAGTGGACGCTACTTGCCTTCTGAACAAAGAGTCAAGGAAGTCATTACAGCTTTTACAAGGTCTCAAGGGAACTCAACTAATCATTCCAAGAATGGTCATTAGGGAGCTGGATTGCCTGAAGCGACGAGGTAGTTTGTTTAGAAGAATATCAGAAGTTTCTTTGGTGTTGCAATGGATTGAGGAATGTATGGTGAAAACAAAGTGGTGGATCCACGTTCAGAGCTCTATAGAGGAAGGAAGGCCCATCGCACCAACCCCTCCTGCTTCTCCTCCTCGATTCAGTGAAGGAAGTGGGGGATTCATCAGTGGGACGACAAGCTCAGTGCCATTTTCTGCCTGCGGGAGTTTAATGGAAATAGTTTCGCCAACTGCAGAAGACCATATCCTTGAATGTGCTCTTTTCTTCAGGAGAATAAAGAATGATGGACAGCTTGTCCTTTTTACCAATGATGTCACTCTGAAGATCAAAGCCATGGCAGAAGGTTTGAATTGTGAGACAGTAGAGGAATTCCGTGAGAGTCTGGTGAACCCCTTTTCTGAGAGGTTCATGTGGTCTGACAGCTCTCCCAGAGGACAGACTTGGTCCTACTTAGATGATGTAGTTCTAAGGGAGAAATATTACCGCTGCCCTCTGAAGAAGGCATCAAAGGGAGGAGAAAGTGCAAAGGGTTTGAAGCTGATACTCCTCCACAATTCTCATTATGGGAAGATCGGTTCAATCAGCTAA 2610 43.26 MADENEKKIPVFTVLKNNAILKNIFVIDQPPPGISEPERPEHVLEEILMVGRHPDCNIMLTHPSISRFHLQIYSNPTLQKLSVMDLSSVHGTWVSEKKIQPRARVELKEGDIIRLGSSSRIYRLHWVPLSQAYDLENPFVSASDVLMEEEKEDEIYQDVSSFSVDSKEIQSQHPVLKGMESVFSDENCEPFVEKPIPSAPPEPENMNSSASDEEKTEGEGLPVVEAFEEIENQSPSRRDYEQTEILGAVNLLPSAEVLLETRNEQLDEEIKSPQPLFVSEVFSQGETPVGLPTKSWQKSKLLGSLDSYVADDKIEIPLVAEVLEEVENQSPPRKGYEQREASGLHSGAITTESVNSSVPDRNILSDIGNQQFSNENQPPKPLPVTLGLSDDENPESPPVRLEQKSSLPNIWSRRGKPASVLQIQTGRSTRKCIGDGNGAKIRKPKQEDLENKPISRALFPMLDGEETEIFTPNKENFSPNTLLLKSVNKKKGILEETKQSTLCRSSSSKFSTGPNKCSEEDTSTFSDKENQTPQVLQTRKSVRPSPENSSRNRGKLEKEIMVMKRGAERVPFHSLLENAACKSKSEVSILGAKTRSSNSVNCTGTTGNATNSSFNNSAGEGKRRWNMVVDATCLLNKESRKSLQLLQGLKGTQLIIPRMVIRELDCLKRRGSLFRRISEVSLVLQWIEECMVKTKWWIHVQSSIEEGRPIAPTPPASPPRFSEGSGGFISGTTSSVPFSACGSLMEIVSPTAEDHILECALFFRRIKNDGQLVLFTNDVTLKIKAMAEGLNCETVEEFRESLVNPFSERFMWSDSSPRGQTWSYLDDVVLREKYYRCPLKKASKGGESAKGLKLILLHNSHYGKIGSIS* 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20203330 20206775 + Vvi18g1391 Vvi18g1391 781094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1391 869 SUPERFAMILY SMAD/FHA domain 40 129 IPR008984 GO:0005515
Vvi18g1391 869 MobiDBLite consensus disorder prediction 327 403 - -
Vvi18g1391 869 ProSiteProfiles Forkhead-associated (FHA) domain profile. 48 99 IPR000253 GO:0005515
Vvi18g1391 869 SUPERFAMILY PIN domain-like 626 803 IPR029060 -
Vvi18g1391 869 Gene3D - 2 129 - -
Vvi18g1391 869 MobiDBLite consensus disorder prediction 503 520 - -
Vvi18g1391 869 MobiDBLite consensus disorder prediction 193 216 - -
Vvi18g1391 869 SMART FHA_2 47 99 IPR000253 GO:0005515
Vvi18g1391 869 MobiDBLite consensus disorder prediction 527 549 - -
Vvi18g1391 869 Pfam FHA domain 49 116 IPR000253 GO:0005515
Vvi18g1391 869 PANTHER TRANSMEMBRANE PROTEIN 18 3 863 - -
Vvi18g1391 869 CDD PIN_Smg5-6-like 628 801 - -
Vvi18g1391 869 MobiDBLite consensus disorder prediction 344 380 - -
Vvi18g1391 869 CDD FHA 50 124 IPR000253 GO:0005515
Vvi18g1391 869 Pfam PIN domain 627 795 IPR002716 -
Vvi18g1391 869 PANTHER FHA DOMAIN-CONTAINING PROTEIN PS1 3 863 - -
Vvi18g1391 869 MobiDBLite consensus disorder prediction 503 556 - -
Vvi18g1391 869 Gene3D - 622 802 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1391 - - - vvi:100260631 1701.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1391 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1227 Cone7ag0908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012603 0 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 29